BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0007.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide expo...   110   8e-26
gi|300312073|ref|YP_003776165.1| outer membrane polysaccharide e...    57   9e-10

>gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide export
           protein [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score =  110 bits (275), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 89/131 (67%)

Query: 49  SSTVTNTRVGSGDVLRVTVFGQPDLSAEVGVNDKGILTLPLIGGIDVSGLTTSEISAKVA 108
           S+   +  +G GDV+R+ V+G  DL+ E  +++ G+++ PLIG + + G++T++   K+A
Sbjct: 21  SARAEDIPLGPGDVIRINVYGSQDLTLETRISEAGVISYPLIGEVKIGGMSTAQAERKIA 80

Query: 109 DSLRKGQYLKNPEVSVEVVQLRSQMVSVLGEVSRPGRYPIPGHMSVLELLATAGGLTAQA 168
             L++G YL NP+V++ V    SQM+SVLG+V +PGRYP+ G  +V +++A AGG+    
Sbjct: 81  GMLKQGGYLVNPQVNILVTAPASQMISVLGQVYKPGRYPLDGRRNVADVIALAGGVNPDG 140

Query: 169 DQTVTLLRRKN 179
             T+T++R ++
Sbjct: 141 GDTITIVRTED 151


>gi|300312073|ref|YP_003776165.1| outer membrane polysaccharide
           export protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score = 57.0 bits (136), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 6/130 (4%)

Query: 43  STLALPSSTV-TNTRVGSGDVLRVTVFGQPDLSAEVGVNDKGILTLPLIGGIDVSGLTTS 101
            T ++P++ V +  R+G GD L V V+  P++S  V V   G  + PL   I+ SG T  
Sbjct: 29  DTASVPAAPVNSEYRIGPGDNLNVIVWRNPEVSLVVPVRPDGKFSTPLANDIEASGKTPK 88

Query: 102 EISAKVADSLRKGQYLKNPEVSVEVV---QLRSQMVSVLGEVSRPGRYPIPGHMSVLELL 158
           E+ A++A +L    Y+ +P V+V V     + S  + V+G+ ++P   P    MS+L+++
Sbjct: 89  EVGAEIAKAL--SAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKPQALPYRKEMSLLDVV 146

Query: 159 ATAGGLTAQA 168
              GG T  A
Sbjct: 147 IAVGGTTEFA 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 530,836
Number of extensions: 19140
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)