BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0005.p
         (404 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis ...   179   4e-46

>gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score =  179 bits (454), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 137/436 (31%), Positives = 207/436 (47%), Gaps = 68/436 (15%)

Query: 27  FKTLMATMAVTIVVTLL----LPKTYTASSDVFLDYKGNDPINGRLFSPMMDESYMQTQL 82
            K ++A   VT+V  L+    LPKTY A+S V L+YK  DP+ G + +      YM TQ+
Sbjct: 14  LKIILAIFGVTVVAALVVSLVLPKTYKATSSVVLNYKATDPVTGTMVTAQALPGYMPTQV 73

Query: 83  DMIKSQAVAEKVIDALDLERTAAARRARAR--------------------ARARRAS--- 119
           D+I S++ A  V+DAL L +  A + + A                     A+A R S   
Sbjct: 74  DIINSRSTALAVVDALKLAQDPAVKESYANSNSQLDIRNWLAGILLGNLDAQASRDSSVI 133

Query: 120 ---------------ARARREQY-------------------NAQLEHLRKEADSIQEKL 145
                          A A  E Y                   N Q++ LR+  +  Q KL
Sbjct: 134 DITYKGRDPQTVATMANAFAEAYQQVSMQLKLDPTRKASAYFNDQIKVLRENYEQAQAKL 193

Query: 146 TKYQQDVGILDPNERNDLQSRQLGDLMTSLIAVQNQQQEALARKNATDSLVRGGLRIDEL 205
           +KYQQ+ GI + + R D+++ +L DL T L+A Q    EA +R+ A  S           
Sbjct: 194 SKYQQEHGITNLDNRVDVENNRLNDLSTQLVAAQGALAEAQSRRQAAGS-------AQNS 246

Query: 206 PEVAQRPNINDLKSKLSDVNKRLADIQDVLGPRHPKTLALISERDDLAARISREARSSLD 265
           P+V   P + +LK+ L+    R A     LG +HP  L   +E D L A+++    ++  
Sbjct: 247 PDVNANPLVQNLKANLAASEARFAQAAKRLGTQHPDYLNAKAEVDGLRAQLNAAIAATSA 306

Query: 266 AQQIDARRLAMQEQALRKEVDTQRDKLLEQKKHRDTITSYQRQLDSVERVYNTALAKYDE 325
           +   +A  L  +E  +R E + Q+ K+LE  + RD ++   R LDS +R Y     ++ +
Sbjct: 307 SVATNASILQKREAEIRSEFNAQKQKVLELNRTRDELSVLSRDLDSAQRAYELTAQRFTQ 366

Query: 326 ILMASNINTFDLTVLRVAEVPSSHSKPLLLQNIAASILVGLALGLCLALLYELGQRRVRC 385
             +    N  D+++L  A  P++ S P L  N+  S+ VGL LG+  AL  EL  RRVR 
Sbjct: 367 TNLEGQSNQSDISILASAMPPTAPSSPRLFINLILSMFVGLVLGVMAALGLELINRRVRS 426

Query: 386 EDDLVRGIHLPLIGHI 401
           E DLV GI LP++G I
Sbjct: 427 EADLVEGIGLPVLGTI 442


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 877,268
Number of extensions: 30312
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,207,925
Effective search space: 382912225
Effective search space used: 382912225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)