BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0004.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311309|ref|YP_003775401.1| EPS biosynthesis protein [Herba...   142   2e-35

>gi|300311309|ref|YP_003775401.1| EPS biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  142 bits (358), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 105/154 (68%), Gaps = 2/154 (1%)

Query: 17  MGARFVEAGLLTPDQVTRVVELQNSANIRFGEAAVKLGLLTEQNVQAVLSEQFNYATALV 76
           +GA  ++ G LTP++  R++ LQ    +RFG+AA++LGLLT+ ++   LS QF+Y   + 
Sbjct: 20  IGAILIDVGKLTPEKAERILRLQRERGMRFGDAAIQLGLLTQADIDQALSRQFDYPYLMK 79

Query: 77  PTESLDDSLDIALAPFGLEAEAIRQIRAELSIRLSDQE--KISLAIVSAAEGEGKSYLAA 134
               + +++  A  PF  + E +R +R++L +R  D +    +L I S A GEG+S+LAA
Sbjct: 80  GESKVSEAVVAAYNPFSAQVETLRALRSQLMLRWFDADLGHKALTITSPARGEGRSFLAA 139

Query: 135 SLALAFSQMGKRTLLIDADMRSPRQHELFGLETK 168
           +LA+ FSQ+G+RTLLIDADMR PRQHELFGL+ +
Sbjct: 140 NLAVVFSQLGERTLLIDADMRHPRQHELFGLDNR 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 451,915
Number of extensions: 14785
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)