BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0002.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312639|ref|YP_003776731.1| choline dehydrogenase [Herbaspi...   157   4e-40
gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like prot...   126   5e-31
gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase [Herbas...   119   9e-29

>gi|300312639|ref|YP_003776731.1| choline dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  157 bits (396), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/138 (53%), Positives = 95/138 (68%), Gaps = 1/138 (0%)

Query: 1   LGYHPFPTPAANSSGVYTNPDGQKLGQCQYCGHCERFICEAQAKGSPEVLLYPMLKQRKG 60
           +GYHP+P PAAN+S  +TNP G ++G C YCG CE + C   +K SP+  + P+L +RK 
Sbjct: 209 VGYHPYPAPAANASQPFTNPYGVRIGPCNYCGFCENYGCYMYSKASPQTTILPVLLKRKN 268

Query: 61  FELRLNSHVLGVNYDQKAKRVTGVRYLDLLSGQEYEQPADVVVLGAFTMTNTKLLLLDKI 120
           FE+R  + V+ VN D   KR TGV Y+D   G+E EQPAD+V+L AF   N +LLLL  I
Sbjct: 269 FEVRTKAQVIKVNLDASGKRATGVTYID-AQGREVEQPADLVLLTAFQTHNVRLLLLSGI 327

Query: 121 GTPYDPSTGKGVVGKNFC 138
           G PYDP TG+GVVGKNF 
Sbjct: 328 GKPYDPVTGEGVVGKNFA 345


>gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 590

 Score =  126 bits (317), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 89/142 (62%), Gaps = 1/142 (0%)

Query: 1   LGYHPFPTPAANSSGVYTNPDGQKLGQCQYCGHCERFICEAQAKGSPEVLLYPMLKQRKG 60
           LGYHPFP P+AN S  +TNP G ++  C YCG C ++ C   +K SP+  +  ++K+   
Sbjct: 209 LGYHPFPNPSANVSQAWTNPYGAQIAPCNYCGFCSKYPCLNYSKASPQTTILDVVKRLPN 268

Query: 61  FELRLNSHVLGVNYDQKAKRVTGVRYLDLLSGQEYEQPADVVVLGAFTMTNTKLLLLDKI 120
           F+ ++N++V+ V+     K   GV Y+D  + +E  QPA +V+L +F   N +L+LL  I
Sbjct: 269 FDYKVNANVIRVDLHADKKTARGVTYVD-ENMKEVFQPAKIVILSSFQFANVRLMLLSGI 327

Query: 121 GTPYDPSTGKGVVGKNFCXVNN 142
           G PYDP T  GV+G+N+  ++N
Sbjct: 328 GKPYDPITETGVIGRNYAFLSN 349


>gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  119 bits (298), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 2   GYHPFPTPAANSSGVYTNPDGQKLGQCQYCGHCERFICEAQAKGSPEVLLYPMLKQRKGF 61
           G HPF  P+AN++  Y N  G ++G C +CG C  + C   +K SP V + P L+Q   F
Sbjct: 212 GLHPFTLPSANAAAPYVNQYGCQMGPCTFCGFCSGYACYNYSKASPNVNIMPALRQSNLF 271

Query: 62  ELRLNSHVLGVNYDQKAKRVTGVRYLDLLSGQEYEQPADVVVLGAFTMTNTKLLLLDKIG 121
           ELR + +VL +  D   K+ TGV Y+D ++G    QPA +V+   F   N +L LL  IG
Sbjct: 272 ELRSSCNVLRIELDSSRKKATGVTYVD-INGDTVFQPASIVIASTFAYNNARLFLLSGIG 330

Query: 122 TPYDPSTGKGVVGKN 136
            PYDP +  G VG+N
Sbjct: 331 KPYDPVSNTGAVGRN 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 490,359
Number of extensions: 19142
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 3
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)