BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0067.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310805|ref|YP_003774897.1| major facilitator superfamily p...   317   3e-88

>gi|300310805|ref|YP_003774897.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 580

 Score =  317 bits (813), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/187 (90%), Positives = 177/187 (94%)

Query: 1   MAFDFLEKEHTIAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGIKESIACAP 60
           MAFDFL KEHT+AKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALG+   IAC  
Sbjct: 33  MAFDFLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGA 92

Query: 61  DTGFFAQVFSTTCDWKISMLGWMYTMFFVLLGISAAIWGGWLERAGPRKAGVVSALCWCG 120
           D GFFAQVFS++CDWKISMLGWMYTMFFVLLGISAA+WGGWLE AGPRKAGVV+A+CWCG
Sbjct: 93  DVGFFAQVFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCG 152

Query: 121 GLLISAFGVYTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFG 180
           GLLISA GV THQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFG
Sbjct: 153 GLLISALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFG 212

Query: 181 GGALVGS 187
           GGALVG+
Sbjct: 213 GGALVGT 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.144    0.502 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 635,658
Number of extensions: 24058
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)