BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0066.p (523 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310802|ref|YP_003774894.1| LysR family transcription regul... 507 e-145 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 184 2e-47 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 162 6e-41 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 155 1e-38 gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 154 1e-38 >gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 507 bits (1306), Expect = e-145, Method: Compositional matrix adjust. Identities = 243/291 (83%), Positives = 263/291 (90%) Query: 9 PLLEDLRLFCVVARKNSFAESAKEMGSSPAYVSKRIALLEAALGVRLFHRTTRSVVMTEE 68 PLLEDLRLFCVVAR +SFA SA+E+G+SPAY+SKRIALLE ALGVRLFHRTTRSVVMTEE Sbjct: 5 PLLEDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEE 64 Query: 69 GSNVHEWARRILDDVDQMMETVSSAKQVPRGLLKISTSFGLGRKYVSPLLSAFARLHPAL 128 G NVHEWARRILDDV+QMMETVSSAK+VPRGLLKISTSFGLGRK VSPLLS FA HP L Sbjct: 65 GGNVHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPEL 124 Query: 129 RIQLELFDRQVDMINEGFDLDIRVGPVHEPHLFSKRIIASQRVLCASPDYLSRHGAPQTL 188 +IQLEL DRQ+D++NEG DLDIRVG HEPHLFSKRI+ SQRVLCASP YL +HG P L Sbjct: 125 KIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGLPADL 184 Query: 189 SDLTRHQCLVIRERNQSFGIWRMMGPKGAETVKVAGGLASNHGEIIHQWAIDGHGVILRS 248 + L +HQCLVIRERNQSFGIWRMMGPKG ETVKV+G LASNHGEIIHQWA+DGHG+ILRS Sbjct: 185 AALRQHQCLVIRERNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGHGIILRS 244 Query: 249 IWDVAASLKEGSLVRVLPGYFQEADLCAVYPLQLKNSAKVRECVRFLQKNL 299 WDVA SLK G LVRVLP Y+QEADLCAVYPLQLKNSAKVRECVRFLQK+L Sbjct: 245 AWDVADSLKRGRLVRVLPQYYQEADLCAVYPLQLKNSAKVRECVRFLQKHL 295 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 184 bits (466), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 157/287 (54%), Gaps = 2/287 (0%) Query: 11 LEDLRLFCVVARKNSFAESAKEMGSSPAYVSKRIALLEAALGVRLFHRTTRSVVMTEEGS 70 + + F VA + S + +A+ G +PA + +R+ LE LGV+L RTTR +V+T EG+ Sbjct: 4 FKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEGA 63 Query: 71 NVHEWARRILDDVDQMMETVSSAKQVPRGLLKISTSFGLGRKYVSPLLSAFARLHPALRI 130 E +RIL D++ VS G L IS G GR++V+PLL +F H + + Sbjct: 64 AFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVTL 123 Query: 131 QLELFDRQVDMINEGFDLDIRVGPVHEPHLFSKRIIASQRVLCASPDYLSRHGAPQTLSD 190 L L DR D+I EG D+ IR+ + + +L S ++ + RV+ A+P YL RHG PQ+ + Sbjct: 124 TLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPDE 183 Query: 191 LTRHQCLVIRERNQSFGIWRMMGPKGAETVKVAGGLASNHGEIIHQWAIDGHGVILRSIW 250 L RH CL + G W + KV G + N GE++H WA+ G G+ RS+W Sbjct: 184 LMRHNCLAMSSEGSQRG-WTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRSMW 242 Query: 251 DVAASLKEGSLVRVLPGYFQEA-DLCAVYPLQLKNSAKVRECVRFLQ 296 +V A+++ G LV VL + A + AV+ + ++R V FL+ Sbjct: 243 EVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLR 289 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 162 bits (410), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 159/288 (55%), Gaps = 2/288 (0%) Query: 11 LEDLRLFCVVARKNSFAESAKEMGSSPAYVSKRIALLEAALGVRLFHRTTRSVVMTEEGS 70 L ++ F VA SF ++A+ +G S A VS+ + LEA LG RL RTTR + +TE G+ Sbjct: 4 LREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGA 63 Query: 71 NVHEWARRILDDVDQMMETVSSAKQVPRGLLKISTSFGLGRKYVSPLLSAFARLHPALRI 130 E ++I+ +++ + +SS P GLL+I+ G +++PL F HP + + Sbjct: 64 LYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISL 123 Query: 131 QLELFDRQVDMINEGFDLDIRVGPVHEPHLFSKRIIASQRVLCASPDYLSRHGAPQTLSD 190 + L DR VD+I+EG+D+ IR+ + + L +++ ++ +CASP YL HG P + Sbjct: 124 DITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHE 183 Query: 191 LTRHQCLVIRERNQSFGIWRMMGPKGAETVKVAGGLASNHGEIIHQWAIDGHGVILRSIW 250 L +HQ + NQS W+ GP+G +V+V+ L N+G+ Q A+ G G+ + + Sbjct: 184 LAQHQT-ISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTF 242 Query: 251 DVAASLKEGSLVRVLPGY-FQEADLCAVYPLQLKNSAKVRECVRFLQK 297 + L+ G LV +L Y E + AVYP + AK+R + FL + Sbjct: 243 MIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTE 290 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 11/296 (3%) Query: 11 LEDLRLFCVVARKNSFAESAKEMGSSPAYVSKRIALLEAALGVRLFHRTTRSVVMTEEGS 70 L+ +R+F V + SF +A+ + S A ++ IA LEA LG RL +R+TR + +TE G Sbjct: 4 LQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQ 63 Query: 71 NVHEWARRILDDVDQMMETVSSAKQVPRGLLKISTSFGLGRKYVSPLLSAFARLHPALRI 130 E R IL +VD VS + P G L I + G G+ + +LSA+++ +P + + Sbjct: 64 AYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPEVAL 123 Query: 131 QLELFDRQVDMINEGFDLDIRVGPVHEPHLFSKRIIASQR-----VLCASPDYLSRHGAP 185 + L +R +D++ EG D +G F +I Q +LC SP Y++R GAP Sbjct: 124 DISLSERSIDLVEEGID----IGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAP 179 Query: 186 QTLSDLTRHQCLVIRERNQSFGIWRMMGPKGAETVKVAGGLASNHGEIIHQWAIDGHGVI 245 + DL+RH CL W + G V + + SN G ++ A+ G G++ Sbjct: 180 EQPEDLSRHNCLNFSHEYLRHH-WHVNTNGGVLDVPIVSKVVSNSGVLLRDLALAGMGIV 238 Query: 246 LRSIWDVAASLKEGSLVRVLPGY-FQEADLCAVYPLQLKNSAKVRECVRFLQKNLP 300 LR + + L+ G LV+VLPG+ + + VYP + SAKVR F+ P Sbjct: 239 LRPSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARFP 294 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 149/290 (51%), Gaps = 2/290 (0%) Query: 11 LEDLRLFCVVARKNSFAESAKEMGSSPAYVSKRIALLEAALGVRLFHRTTRSVVMTEEGS 70 L D+ LF V R SFA + + + P +S+R+ LEAA+GVRL R+TR + MT G Sbjct: 4 LNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAAGR 63 Query: 71 NVHEWARRILDDVDQMMETVSSAKQVPRGLLKISTSFGLGRKYVSPLLSAFARLHPALRI 130 E L+D++ +++ ++ P G L+++ + + F L+P +++ Sbjct: 64 EFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPKVQL 123 Query: 131 QLELFDRQVDMINEGFDLDIRVGPVHEPHLFSKRIIASQRVLCASPDYLSRHGAPQTLSD 190 + L D + D+I EG DL R G + + L +++++ S L ASP YL R G PQ+L+D Sbjct: 124 EFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQSLTD 183 Query: 191 LTRHQCLVIRERNQSFGIWRMMGPKGAETVKVAGGLASNHGEIIHQWAIDGHGVILRSIW 250 LT H CL + Q +W++ GP G E+VKV L N + + A G G+ L Sbjct: 184 LTAHACLATSQAPQH-TVWKLEGPHGPESVKVTPRLCVNTAQGQLRAARAGLGIALLPTM 242 Query: 251 DVAASLKEGSLVRVLPGYFQEA-DLCAVYPLQLKNSAKVRECVRFLQKNL 299 + L+ G+LV +LP Y ++ AVY + + + V + F L Sbjct: 243 LASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKL 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,594,104 Number of extensions: 68132 Number of successful extensions: 354 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 315 Number of HSP's successfully gapped: 53 Length of query: 523 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 433 Effective length of database: 1,193,720 Effective search space: 516880760 Effective search space used: 516880760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)