BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0059.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312995|ref|YP_003777087.1| hypothetical protein Hsero_3701...   112   1e-26

>gi|300312995|ref|YP_003777087.1| hypothetical protein Hsero_3701
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  112 bits (281), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 68/93 (73%), Gaps = 11/93 (11%)

Query: 58  MPPMLRRRASATGKMALETAYACLPEQAV-PS----------DLPVIFASRHGECARSVE 106
           MPPMLRRR S  GK+ALETAY  L   A  PS          D+PV+FASRHGECARSVE
Sbjct: 1   MPPMLRRRTSPVGKLALETAYGALTAAASHPSHDARPAASDLDIPVVFASRHGECARSVE 60

Query: 107 LLQELAQHAPLSPTSFSLSVHNANGGLWSIARG 139
           L   LA+ AP+SPT+FSLSVHNAN GL+SIARG
Sbjct: 61  LQMALAEAAPMSPTAFSLSVHNANAGLFSIARG 93


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 579,632
Number of extensions: 22857
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)