BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0053.p
         (435 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family prote...   367   e-102

>gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 586

 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/361 (55%), Positives = 238/361 (65%), Gaps = 4/361 (1%)

Query: 5   IDVPALPLAARADSHVTGWRDGEAVTHAQFIQETAGWRQLLLRRPGMRFALYLQDTIAFA 64
           +D+  LP  A A + V GWRDG AVTHA +  E   W+ L+   PG R AL+  DT+ FA
Sbjct: 7   LDLLQLPFLAFAGADVIGWRDGVAVTHASWRAELRRWQHLVQTTPGQRMALFHHDTLQFA 66

Query: 65  AALLGAWQAGRTIYLPSDTLAETCKALALEVDGFIGEFDAALQPLQPLSTSEAIDTGHAP 124
           AAL   W AG+T YLPSD L +TC+ L  EVD F+GEF A    L P   +   DT  A 
Sbjct: 67  AALFAIWLAGKTAYLPSDALPDTCRQLQGEVDAFLGEFGAHCPALHPAGDAAEGDTPDAW 126

Query: 125 QQLHRDAPALVVYTSGSTGAAQAIPKKLSQLSTEVATLEALFGTQAGSADVVSTVSHQHI 184
             L  D   LVVYTSGSTG AQAIPK+L Q++ EVATLEALFG   G A+V++TVSHQHI
Sbjct: 127 PTLRADFGGLVVYTSGSTGLAQAIPKQLGQMANEVATLEALFGAIVGEAEVIATVSHQHI 186

Query: 185 YGLLFKVLWPLAAGRAIHARSAFFPEDLAAIAPQRPWLLLSSPAHLKRLPDSPVQPDISR 244
           YGLLFKVLW L AGR +HA SAFFPEDL  +A  RPW+LLSSPAHLKRLP+   QPD  +
Sbjct: 187 YGLLFKVLWALCAGRPVHAGSAFFPEDLQRMAGARPWILLSSPAHLKRLPEQGAQPDARQ 246

Query: 245 LQAVFSSGGPLLPDVAAATQQLLGHRPIEIYGSSETGGIAWRQPQEIGGTVRDDSWRPMP 304
           L+A+FSSGGPL    AA + +LLG RP+EIYGSSETGGIAWRQPQ      R + W+ MP
Sbjct: 247 LRAIFSSGGPLPAQAAADSARLLGQRPLEIYGSSETGGIAWRQPQ-TDPLQRQEHWQAMP 305

Query: 305 RVEVRLNGDHDCLEVRSPHLPDDHWLRMADRVEFATKQ--NFHLGXRPRRPHRQARRKTH 362
            VEVRL  + + LEVRSPHLPD  W  MADR      Q   F L  R  R  +   ++  
Sbjct: 306 GVEVRLGAEGE-LEVRSPHLPDSAWFGMADRAALVPGQPGQFELRGRSDRIVKLEEKRIS 364

Query: 363 L 363
           L
Sbjct: 365 L 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,310,979
Number of extensions: 53078
Number of successful extensions: 199
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,203,190
Effective search space: 417506930
Effective search space used: 417506930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)