BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0052.p
         (180 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family prote...   217   4e-58

>gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 586

 Score =  217 bits (553), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 114/180 (63%), Positives = 135/180 (75%), Gaps = 2/180 (1%)

Query: 1   VLDQQGKLALNNRLRAVLADAIESVALPRLWRYLDALPANPQGKTTVAALTALLE-PTPS 59
           +L  QGKLALN  L+AVLA AIES+ALPRLWRYL ALP NPQGK T++ALTALLE P  +
Sbjct: 408 MLAAQGKLALNTALKAVLAGAIESIALPRLWRYLPALPVNPQGKVTLSALTALLESPAAA 467

Query: 60  PLSTKRPLWPGQTVLQRGEHSVVLQLHVPPDLLYFDGHFPEAPILPGVVQLDWALALGRQ 119
           P+ +  P  P  + L+R    V L L +P DLLYF GHFP +PILPGVVQ DW+LALGR+
Sbjct: 468 PVVSA-PTLPQVSELERSSEHVQLALDIPADLLYFRGHFPGSPILPGVVQTDWSLALGRR 526

Query: 120 YFDLPAHFRALQALKFQRVVTPGATLTLELENDTQKNTLAFRLHSANGQHASGRILFGEA 179
           YFDLP HF  LQALKFQRV+TPG  + L+L+ +  K+ L+FRLHS  GQHASGR L G A
Sbjct: 527 YFDLPPHFLGLQALKFQRVITPGMRVLLDLQFEAGKSQLSFRLHSEGGQHASGRFLLGAA 586


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 590,992
Number of extensions: 24746
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 101
Effective length of database: 1,245,805
Effective search space: 125826305
Effective search space used: 125826305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)