BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0051.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2 f...   343   7e-96

>gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  343 bits (880), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 171/241 (70%), Positives = 193/241 (80%)

Query: 2   KTGVVIPVYNHELAIPGVLAAVLAHGLHCILVDDGSSAACAAVLDRLAAEHPHEVTLLRH 61
           +T VVIPV++HE AI  V+AAV +HGL CILVDDG S  CAAVL +LAA  P   TLL H
Sbjct: 8   RTVVVIPVFDHEHAIGAVVAAVRSHGLPCILVDDGCSPGCAAVLRQLAAADPQATTLLVH 67

Query: 62  SANRGKGGAVLTGLHHLAQHGYSHALQIDSDGQHDAADVARFVALSARHPRAVINGCPVY 121
             N+GKGGAV+TGL H A  GY+HALQID+DGQHD+AD+ RF+A S   P+AVING PVY
Sbjct: 68  PHNQGKGGAVMTGLRHAAAAGYTHALQIDADGQHDSADIPRFLAASQAAPQAVINGRPVY 127

Query: 122 DDSVPKGRLYARYLTHVWVWINTLSFDIRDSMCGFRLYPLAAVTALTSAQKIGSRMDFDT 181
           D+SVPKGRLYARYLTHVWVWINTLS +I DSMCGFRLYPLA    L     IG RMDFDT
Sbjct: 128 DESVPKGRLYARYLTHVWVWINTLSLEIVDSMCGFRLYPLAPTLQLIDRTTIGRRMDFDT 187

Query: 182 EILVRLHWRGVQVINLPTRVRYPSDGVSHFKMWLDNVLISRMHTVLFFGMLWRAPLLLAR 241
           EILVRL+WRG++V NL TRVRYP+DGVSHF++WLDNVLISRMH  LF GML RAPLLL R
Sbjct: 188 EILVRLYWRGLRVHNLATRVRYPADGVSHFQVWLDNVLISRMHARLFLGMLLRAPLLLGR 247

Query: 242 K 242
            
Sbjct: 248 S 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 742,096
Number of extensions: 28559
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)