BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0050.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313002|ref|YP_003777094.1| acyltransferase [Herbaspirillum...   204   4e-54

>gi|300313002|ref|YP_003777094.1| acyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 320

 Score =  204 bits (519), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 127/206 (61%), Gaps = 52/206 (25%)

Query: 8   AAASSRHWAHINEVSFIGGMRLLFAVYRVFGRWPFRLMLYPVLLWYMARN---------- 57
           A + +RHWA INEVSF+ GMRLLFAVYR+ GR PFRLMLYPVL WY+A N          
Sbjct: 3   APSRTRHWAQINEVSFVAGMRLLFAVYRLLGRLPFRLMLYPVLCWYIAVNGPARCASRRF 62

Query: 58  ------------------------------------------PAARAXASGGEIVAEAIA 75
                                                     P  R    G   + +AIA
Sbjct: 63  LEQVRRYRPDLPLRTGIAGVLRHFAAFGESLLDKMLLWGGLFPVERVQLHGSAHITDAIA 122

Query: 76  ARRGGLLICTHLGNLELCRVAGRNHPELKLTVLVHTKHAQAFNRMLAQLDPRSQLDLIQV 135
           A RGGL+ICTHLGNLELCRV GR HP LKLTVLVHT+HAQAFN+MLAQLDP SQL+L+QV
Sbjct: 123 AGRGGLIICTHLGNLELCRVIGRQHPALKLTVLVHTRHAQAFNQMLAQLDPGSQLNLMQV 182

Query: 136 TDMTPATAVLLADKVARGEFVPXLSD 161
           T+M+PATA++LA+KVA+GEFV    D
Sbjct: 183 TEMSPATAIVLAEKVAQGEFVVIAGD 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 544,880
Number of extensions: 20203
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)