BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0048.p (583 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313003|ref|YP_003777095.1| histidine ammonia-lyase [Herbas... 617 e-178 gi|300313004|ref|YP_003777096.1| 4-hydroxybenzoyl-CoA thioestera... 244 1e-65 gi|300313821|ref|YP_003777913.1| histidine ammonia-lyase [Herbas... 152 9e-38 >gi|300313003|ref|YP_003777095.1| histidine ammonia-lyase [Herbaspirillum seropedicae SmR1] Length = 526 Score = 617 bits (1591), Expect = e-178, Method: Compositional matrix adjust. Identities = 308/385 (80%), Positives = 328/385 (85%), Gaps = 5/385 (1%) Query: 1 MRHTDTSTSSDDIAFVTFGSGPLSIEDVNAIAAGSARAALSDAPDFLARIRRGADFLDRL 60 M HTD ++S+ + FG+ PL+IEDV A+A A L DAPDF ARI RGADFLDRL Sbjct: 1 MPHTDLTSSASSTP-IRFGAQPLAIEDVVALARRERSAQLHDAPDFRARIARGADFLDRL 59 Query: 61 LREDGTVYGVTTGYGDSCTVNVPPELVPELPHHLYTYHGCGLGELFSPQQTRAILAARLT 120 LREDGT+YGVTTGYGDSCTV VPPELVPELPHHLYTYHGCGLG LF+P+Q RAILAARL Sbjct: 60 LREDGTIYGVTTGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQARAILAARLN 119 Query: 121 SLSKGYSGVSVGLLNQIAALLQHDLLPLIPAEGSVGASGDLTPLSYLAAVLCGERKVWGT 180 SL +G+SGVSV LL QI LLQHDLLP IP EGSVGASGDLTPLSYLAAVLCGER VW Sbjct: 120 SLCQGFSGVSVALLEQITGLLQHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERDVW-- 177 Query: 181 EKNRGEQVDAATALQAAGLTPLKLRPKEGLAIMNGTAVMTALACMAYQRAEYLCQLATRI 240 G V AA AL AAG+TPL+LRPKEGLAIMNGTAVMTALAC+A+ RA YLCQLATRI Sbjct: 178 --REGATVPAAQALAAAGMTPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRI 235 Query: 241 TAMASFTLDGNAHHFDATLFSVKPHPGQQQVAGWLQADLRCDQPLRNEKRLQDRYSIRCA 300 TAM+SFTLDGNAHHFDATLFS KPHPGQQQVA WLQ DL C Q RNEKRLQDRYS+RCA Sbjct: 236 TAMSSFTLDGNAHHFDATLFSAKPHPGQQQVAAWLQRDLPCGQAHRNEKRLQDRYSVRCA 295 Query: 301 PHVIGVLTDALPWLRSYIENELNSANDNPLIDPDNERVLHGGHFYGGHIAFAMDSMKNAV 360 PHVIGVL DALP LR +IENELNSANDNPLIDPD ERVLHGGHFYGGHIAFAMDSMK AV Sbjct: 296 PHVIGVLNDALPSLRQFIENELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAV 355 Query: 361 ANIADLLDRQMALMVDNRYNNGLPA 385 AN+ADLLDRQMALMVD RYNNGLPA Sbjct: 356 ANVADLLDRQMALMVDQRYNNGLPA 380 >gi|300313004|ref|YP_003777096.1| 4-hydroxybenzoyl-CoA thioesterase [Herbaspirillum seropedicae SmR1] Length = 154 Score = 244 bits (623), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 127/151 (84%) Query: 432 TELPQGKMTLANSPWTGEVELQVQFYDIDPMEVVWHGRYIEYFEAARCALLDKIGYNYGE 491 T LP GK+TLANSPW GEVELQ+QFYD+DPME+VWHGRY+EY EAARCALLD IGYNY Sbjct: 4 TVLPAGKLTLANSPWRGEVELQIQFYDLDPMEIVWHGRYVEYMEAARCALLDGIGYNYPA 63 Query: 492 MKDSGYMWPIIDLQVRYSNPATFRQRIKVRAAIVEWENRLKMEYLVTDAASGQRLTRGVT 551 MK SGY WP+IDL +RY+ PA F QRI+V+AAIVEWENRL+++YL++DAASG RLTR T Sbjct: 64 MKQSGYGWPVIDLHLRYAAPARFGQRIRVKAAIVEWENRLRIDYLISDAASGARLTRAST 123 Query: 552 TQVAVQMEKREMCFLSPPVLWQKLGLPYPEP 582 QVAVQM EMCF+SPPVLW KLGL P P Sbjct: 124 VQVAVQMNNHEMCFVSPPVLWHKLGLTPPAP 154 >gi|300313821|ref|YP_003777913.1| histidine ammonia-lyase [Herbaspirillum seropedicae SmR1] Length = 542 Score = 152 bits (383), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 117/378 (30%), Positives = 188/378 (49%), Gaps = 38/378 (10%) Query: 33 AGSARAALSDAPDFLARIRRGADFLDRLLREDGTVYGVTTGYGDSCTVNVPPELVPELPH 92 A S+RAAL + D++ + E +Y TG G + E + Sbjct: 30 ADSSRAALKQSRDYIESTW--------MHDEAPMMYSFNTGVGLLKDTRIKVEHIELFQT 81 Query: 93 HLYTYHGCGLGELFSPQQTRAILAARLTSLSKGYSGVSVGLLNQIAALLQHDLLPLIPAE 152 L H G+GE FS + +RA + R + + YS V +++++ A + + P++P + Sbjct: 82 QLIRAHSAGIGEAFSEEVSRATMLLRANAFASNYSAPRVEVVDRLLAFINAGIHPIMPQK 141 Query: 153 GSVGASGDLTPLSYLAAVLCG--ERKVWGTEKNRGEQVDAATALQAAGLTPLK--LRPKE 208 GSVGASGDL PL+YLAA + G E +V +G+++ A A++ AG+ P+K L+ K+ Sbjct: 142 GSVGASGDLAPLAYLAAAIAGFDEAEVM----YQGQRMRATEAIEQAGIGPVKFDLKAKD 197 Query: 209 GLAIMNGTAVMTALACMAYQRAEYLCQLATRITAMASFTLDGNAHHFDATLFSVKPHPGQ 268 A++NG A+A +A A +L A + + FD + +PH GQ Sbjct: 198 ASALINGCTASLAVAILAAHDARHLLTDACLSLGLTLEAMRAEMSAFDPRIQQARPHAGQ 257 Query: 269 QQVA----GWLQADLRCDQPLRNEK--------------RLQDRYSIRCAPHVIGVLTDA 310 + A LQ R R + R+QD YS+RCAP V G + DA Sbjct: 258 IKTAEVIRTLLQGSTRTTHAARAVQLPDELRRTDIAYTARIQDVYSLRCAPQVYGPVFDA 317 Query: 311 LPWLRSYIENELNSANDNPLIDPDNE----RVLHGGHFYGGHIAFAMDSMKNAVANIADL 366 L ++ + IE E NSA DNPLI E ++ GG+F+G ++A AMD + A+ ++ + Sbjct: 318 LDYIDTIIEKETNSATDNPLIFHKEEGEGFEIISGGNFHGQYLAQAMDLLAMAITDLGSI 377 Query: 367 LDRQMALMVDNRYNNGLP 384 +R++A ++D + GLP Sbjct: 378 CERRIARLIDPTLSWGLP 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,688,569 Number of extensions: 65470 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 3 Length of query: 583 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 493 Effective length of database: 1,193,720 Effective search space: 588503960 Effective search space used: 588503960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)