BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0047.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313005|ref|YP_003777097.1| hypothetical protein Hsero_3711...   306   6e-85

>gi|300313005|ref|YP_003777097.1| hypothetical protein Hsero_3711
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  306 bits (785), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 145/180 (80%), Positives = 165/180 (91%)

Query: 10  PVAQIQAALAKPAVMCGRFDQTKQLTGIKKPLLSNGRFCVAAGKGILWQTLQPFPSTLRI 69
           PV QIQA LAKPAVMCGRFDQTKQLTGIKKPL + GRFCV  G+GILWQTLQPFPSTLRI
Sbjct: 24  PVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQAYGRFCVLKGRGILWQTLQPFPSTLRI 83

Query: 70  TRNAIVQMQNGRVAMRLDAQQEPVVKMINNVLFSLLAGDLSQLDKLFELDGAIRNGNWNV 129
           TR+AIVQ+Q+GRVAM+LDAQQEPVVKMIN+VLFSLLAGDLSQLD+LFELDG++R+G+W V
Sbjct: 84  TRDAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLAGDLSQLDQLFELDGSLRDGHWQV 143

Query: 130 ALKAREPGLAKAIGDIRLEGGAYVNKVIMQEASGDHTEIVFSAIQTGDKAMTAEEGAMFD 189
           ALKAR+P LAKAIGDI L G +YV+KV M+EASGD T+I FSAI+TG+ AMTAEEGA+FD
Sbjct: 144 ALKARQPALAKAIGDISLAGASYVDKVSMKEASGDRTDISFSAIKTGEGAMTAEEGALFD 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 527,209
Number of extensions: 20671
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)