BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0046.p
         (616 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillu...   568   e-163

>gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillum
           seropedicae SmR1]
          Length = 810

 Score =  568 bits (1463), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 328/516 (63%), Positives = 394/516 (76%), Gaps = 6/516 (1%)

Query: 40  GHNAYLWLVQRASPDTDILALLP-SSRHDDVMQQAFAHMVDSAQQKVVVLIGEPDWNKAM 98
           GHNA+LWL QRASPDTDILALLP +S  D V QQAF+HMVDSAQQK+VVL+G+ DW +A 
Sbjct: 28  GHNAWLWLGQRASPDTDILALLPGASSKDAVRQQAFSHMVDSAQQKLVVLVGDRDWKRAQ 87

Query: 99  QAASAYEAVIGKQAALLQPLSADAAQLQGAWLASFDQSRLMLLTQDQRDKLRNDSPQQWS 158
             A AY  V+   A L+ P++ D+AQ Q  WL S D+SR +LL   QR +L   + QQW+
Sbjct: 88  AGAQAYLTVLHAHADLVAPINDDSAQWQSQWLGSLDRSRSLLLGDAQRAQLATTTAQQWN 147

Query: 159 QLALSTMYGAFGGPRLGAWQDDPFGLFGGWVQERAQETPVRPRDGRLFVDSGGRSYVLLL 218
           Q AL  +YGAFGGPRLGAWQDDPFGLFG WVQERA+ETPVRPRDG LFV+  G SY LLL
Sbjct: 148 QRALGGLYGAFGGPRLGAWQDDPFGLFGDWVQERARETPVRPRDGMLFVERDGVSYALLL 207

Query: 219 LNLQQSAFSISAQQQIIPLLDQAGRAAKQAVPDAEIITAGVILHAAAGSQQAGSEMTTIG 278
           L L+  AFS+ AQ+Q++PLL QA RAA+      E+++ GV+LHAAA S QA SE  TIG
Sbjct: 208 LELKAPAFSMQAQEQVVPLLAQARRAARTQA--GEVVSGGVVLHAAAASAQASSESATIG 265

Query: 279 AGSLIGIVLLMWLTFRSLRPIALIALSIAIGCLGALSVSWLLFGRLHLLTLVFGASLVGI 338
           AGSL+GI+LLMWLTFRSL+PI  IALSIA+GCLGALSVS L+FG++HLLTLVFGASL+GI
Sbjct: 266 AGSLLGILLLMWLTFRSLKPILYIALSIAVGCLGALSVSMLVFGKIHLLTLVFGASLIGI 325

Query: 339 AQDYAIYFLCARLGTAAQIDSRELLRRLLPGLALMLLAAIIGYLGMALTPFPGLRQMAVF 398
           AQDY IYFLCARL   A  DS  LLRRLLPGLALMLLAA+IGYLGMALTPFPGL+QMAVF
Sbjct: 326 AQDYGIYFLCARLAAPATQDSATLLRRLLPGLALMLLAALIGYLGMALTPFPGLQQMAVF 385

Query: 399 SVLGLLFAWLTVILWFPALIHADTLRSTAPADRYSHSINRWPRFSANRNSYLLLAVFAVF 458
           S LGL+FAWLTV  WFP LI   TL +T  A  +  SI RWP        +L+L      
Sbjct: 386 SALGLVFAWLTVACWFPQLIGPQTLCATPRAQGFGQSIARWPDLLGGFAWHLVLPAAVAL 445

Query: 459 TA---AGLARLNVSDDIRALQKTPQHLIDDQIKLGKLLDTPTPAQFYLVRGDTAEQVLQR 515
                AG+ARL+ SDDIRALQK+P  L+ DQ+++ +LL+   P QFYLVRG +AE VLQ+
Sbjct: 446 IGLAIAGVARLHSSDDIRALQKSPPELLQDQMRISQLLELAAPVQFYLVRGASAEAVLQQ 505

Query: 516 EEQLKQRLQDLIAKKMISGVQAVSNWVPSQRQQQSD 551
           EE L+++LQ L+ +K+I+GVQAVSNW PSQ++QQ +
Sbjct: 506 EEALREKLQALVQRKLITGVQAVSNWAPSQQRQQDN 541


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,654,292
Number of extensions: 60156
Number of successful extensions: 265
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 525
Effective length of database: 1,188,985
Effective search space: 624217125
Effective search space used: 624217125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)