BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0042.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein...   343   1e-95
gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein...   102   4e-23
gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein...    96   5e-21

>gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein]
           synthase II [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  343 bits (879), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 168/228 (73%), Positives = 189/228 (82%)

Query: 11  FPQQFHYGQQELGSPAAALATTLGLSGPAYVHSSACSSSAKAMASAARLISMGLCDAVIS 70
           FP  +HYGQQELGSPA AL  TLG +GPAYV SSAC+SS KA+ASAARL++MGLCDAV+ 
Sbjct: 125 FPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNMGLCDAVLC 184

Query: 71  GGVDTLCDFTIAGFSSLDSVSAERCNPLSINRRGINIGEGAALFLMSSEAATVALCGWGE 130
           GGVDTLC FTIAGF++L+SVSA+RCNPLS++R+GINIGEGAALFL++ E A V L GWGE
Sbjct: 185 GGVDTLCQFTIAGFTALESVSAQRCNPLSLHRQGINIGEGAALFLLTREPAAVQLSGWGE 244

Query: 131 SSDAHHISAPDPDGIGATLAIRQALQRAAIAPEQIDYINLHGTATLQNDAMESKAIHQLF 190
           SSDA+HISAPDP+G GA LAI QAL+RA +   QIDYINLHGTAT QNDAMESK +  LF
Sbjct: 245 SSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAMESKVVQALF 304

Query: 191 GAEVPVSSTKSFTGHALGAASAIEAGLCWLAMQDGNPAGXGAIAAWAG 238
           G EVPVSSTK FTGH LGAASAIEAGLCWL MQD NP G      W G
Sbjct: 305 GLEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDG 352


>gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein]
           synthase II [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 107/205 (52%), Gaps = 19/205 (9%)

Query: 33  LGLSGPAYVHSSACSSSAKAMASAARLISMGLCDAVISGGVDTLCDFTIAGFSSLDSVSA 92
            G++G     SSAC+S ++ +  A   I  G   A+++GG + LC    A F +L + S 
Sbjct: 157 FGITGRIITTSSACTSGSQGIGYAYETIRSGRQLAMVAGGAEELCATEAAVFDTLYATSV 216

Query: 93  ER------CNPLSINRRGINIGEGA-ALFLMSSEAATV-------ALCGWGESSDAHHIS 138
                    +P   +R G+ +GEGA +L L   E A          + G+G +SD  H++
Sbjct: 217 RNDTPQVTPSPFDRDRDGLVLGEGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVT 276

Query: 139 APDPDGIGATLAIRQALQRAAIAPEQIDYINLHGTATLQNDAMESKAIHQLFGAEVPVSS 198
            P+   + A  AI+ AL  A +    I YIN HGT T Q D  E++A  ++FG   P+SS
Sbjct: 277 NPNAATMQA--AIQMALDDAGLPASAIGYINAHGTGTRQGDVAETQATARVFGKATPISS 334

Query: 199 TKSFTGHALGAASAIEAGLCWLAMQ 223
            KS+ GH LGA  A+EA   WL+++
Sbjct: 335 LKSYMGHTLGACGALEA---WLSIE 356


>gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein]
           synthase II [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score = 95.5 bits (236), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 20/214 (9%)

Query: 29  LATTLGLSGPAYVHSSACSSSAKAMASAARLISMGLCDAVISGGVDT-LCDFTIAGFSSL 87
           L+   GL GP     +AC++    + SAAR+I  G  D +++GG ++ +    I GF+S 
Sbjct: 150 LSIKFGLKGPNLAIVTACTTGLHCIGSAARMIMYGDADVMVAGGAESSVSPLGIGGFASA 209

Query: 88  DSVSAERCNPLSI------NRRGINIGEGAALFLMSSEAATVA--------LCGWGESSD 133
            ++S    +P +       +R G  +GEGA + ++       A        L G+G S D
Sbjct: 210 RALSTRNDDPATASRPWDKDRDGFVLGEGAGVMVLEEYEHAKARGAKIYAELLGFGMSGD 269

Query: 134 AHHISAPDPDGIGATLAIRQALQRAAIAPEQIDYINLHGTATLQNDAMESKAIHQLFG-- 191
           A+H++AP+ DG      +  AL+ A + P+++ Y+N HGT+T   D  ES AI   FG  
Sbjct: 270 AYHMTAPNLDG--PRRCVLNALRDAGVNPDEVQYLNAHGTSTPLGDKNESDAIKAAFGDH 327

Query: 192 -AEVPVSSTKSFTGHALGAASAIEAGLCWLAMQD 224
             ++ V+STKS TGH LG A  +E  L  LA+ +
Sbjct: 328 AYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVHN 361


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 779,830
Number of extensions: 24636
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)