BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0040.p
         (168 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein...   207   4e-55

>gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein]
           synthase II [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  207 bits (526), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 99/126 (78%), Positives = 112/126 (88%)

Query: 6   RSRQERRVAVTGMAGISPIGNDWHSAQEHLRSYRNAVVRMPEWDEYNGLHTRLGAPAAAF 65
           R+R ERRV VTGMAGISPIG DW+SA   L+S  NAV RMP WDEY GLHTRLGAPAA F
Sbjct: 3   RARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAAEF 62

Query: 66  ELSERYNRKSTRSMGRVAVLATRASEWALADAGLLDDPLLRNGGIGIAYGSSAGTPSAVA 125
            LSERYNRK+TRSMGRVA++ATRASEWALADAGLLDDPLL++G +GIAYGSSAGTP+A+A
Sbjct: 63  SLSERYNRKTTRSMGRVALMATRASEWALADAGLLDDPLLKSGQLGIAYGSSAGTPNAIA 122

Query: 126 DFSMLF 131
           DF+M+F
Sbjct: 123 DFAMMF 128


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.128    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 378,081
Number of extensions: 11741
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,245,805
Effective search space: 110876645
Effective search space used: 110876645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)