BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0037.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein... 289 1e-79 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 141 6e-35 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 138 4e-34 gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 118 5e-28 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 97 8e-22 >gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 289 bits (740), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 136/159 (85%), Positives = 151/159 (94%) Query: 85 YGVVCNAGIARDNAFPAMPGVDWDSVLKTNLDGFYNVLYPLVMPMIRRRKPGRIVTLASV 144 YGVVCNAGI RDNAFPAMPG DWDSVL+TNLDGFYNVL PLVMPM+RRR GRIVTLASV Sbjct: 86 YGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMPMVRRRAAGRIVTLASV 145 Query: 145 SGMVGNRGQVNYSAAKAGIIGATKALALELAKRNITVNCVAPGLIDTDMTDELPMEEIVR 204 SG++GNRGQVNYSAAKAG+IGATKALALELAKR+ITVNCVAPGLIDTDMT++ P++EI++ Sbjct: 146 SGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPGLIDTDMTEDAPIDEILK 205 Query: 205 MIPARRAGKPEEVASAVSFLMQEDAAYITRQVISVNGGL 243 +IPARRAGKPEEVA+AV+FLM DAAYITRQVISVNGGL Sbjct: 206 LIPARRAGKPEEVAAAVAFLMSPDAAYITRQVISVNGGL 244 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 141 bits (355), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 103/160 (64%), Gaps = 4/160 (2%) Query: 87 VVCNAGIARDNAFPAMPGVDWDSVLKTNLDGFYNVLYPLVMPMIRRRKPGRIVTLASVSG 146 +V NAGI +D M +WDSV+ TNL + ++ M++ R GRI+ + SV G Sbjct: 90 LVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVLRGMMKAR-TGRIINITSVVG 148 Query: 147 MVGNRGQVNYSAAKAGIIGATKALALELAKRNITVNCVAPGLIDTDMTDELPMEE---IV 203 GN GQ+NY+AAKAG+ G ++ALA E+ RNITVNCVAPG IDTDMT L ++ I+ Sbjct: 149 EAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPGFIDTDMTRALNEQQSAAIL 208 Query: 204 RMIPARRAGKPEEVASAVSFLMQEDAAYITRQVISVNGGL 243 + IP R G EE+A AV+FL AAYIT ++VNGG+ Sbjct: 209 QQIPLGRLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGM 248 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 138 bits (348), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 100/160 (62%), Gaps = 4/160 (2%) Query: 87 VVCNAGIARDNAFPAMPGVDWDSVLKTNLDGFYNVLYPLVMPMIRRRKPGRIVTLASVSG 146 +V NAGI RD F M DWD+V+ TNL+ +NV ++ M R GRI+ ++SV+G Sbjct: 85 LVNNAGITRDGQFRKMSKDDWDAVIDTNLNSLFNVTKQVIEGMCER-GFGRIINISSVNG 143 Query: 147 MVGNRGQVNYSAAKAGIIGATKALALELAKRNITVNCVAPGLIDTDMTDELP---MEEIV 203 G GQ NYS AKAGI G T ALA E+A + +TVN V+PG I TDM + +E+IV Sbjct: 144 QKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSPGYIGTDMVRAIRPEVLEKIV 203 Query: 204 RMIPARRAGKPEEVASAVSFLMQEDAAYITRQVISVNGGL 243 IP +R G+PEE+AS V+++ + Y T S+NGGL Sbjct: 204 SGIPVKRLGEPEEIASIVAWIASSEGGYATGSDFSLNGGL 243 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 118 bits (295), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 14/186 (7%) Query: 67 QAIAXAWVGIEYMAQPRIYG----VVCNAGIARDNAFPAMPGVDWDSVLKTNLDGFYNVL 122 ++IA A+ IE + YG +V NAG+AR +F P +W + N+ G Sbjct: 70 ESIAAAFAHIE-----KDYGRCDVLVNNAGVARTYSFLDYPLENWLQTMNVNVTGVLLAG 124 Query: 123 YPLVMPMIRRRKPGRIVTLASVSGMVGNRGQVNYSAAKAGIIGATKALALELAKRNITVN 182 M+++ + GRIV ++S+SG+ G+ Y +KA +IG T+ +A+ELA+ ITVN Sbjct: 125 QHAARLMVKQ-QWGRIVNISSISGIRAGAGRTAYGTSKAAVIGLTRQMAIELAQYGITVN 183 Query: 183 CVAPGLIDTDMT----DELPMEEIVRMIPARRAGKPEEVASAVSFLMQEDAAYITRQVIS 238 VAPG +DT MT E E R++P RR G +E+ASAV +L E++AYIT VI Sbjct: 184 SVAPGPVDTPMTQAMHSEQTRESYYRLVPMRRYGTTDEIASAVCYLAAEESAYITGHVIP 243 Query: 239 VNGGLV 244 V+GG V Sbjct: 244 VDGGFV 249 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 97.4 bits (241), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 7/168 (4%) Query: 83 RIYGVVCNAGIARDNAFPAMPGVDWDSVLKTNLDGFYNVLYPLVMPMIRRRKPGRIVTLA 142 RI +V NAG+ + + G D+D +L +L G + V+P ++ ++ G IV ++ Sbjct: 81 RIDILVNNAGVTQPAKLLEITGKDYDRILDVSLRGTL-YMSQAVLPAMQAQQSGSIVCIS 139 Query: 143 SVSGMVGNR--GQVNYSAAKAGIIGATKALALELAKRNITVNCVAPGLIDTDMT-DELPM 199 SVS G G +YSAAKAG++G +A+A E + I VNC+ PGLI TD+ D L Sbjct: 140 SVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGIRVNCITPGLISTDINKDILSA 199 Query: 200 E---EIVRMIPARRAGKPEEVASAVSFLMQEDAAYITRQVISVNGGLV 244 E EI + IP R G P++V FL + + Y T + VNGG++ Sbjct: 200 EKKAEIAQTIPLGRLGGPDDVGGVCVFLASDLSQYCTGVTLDVNGGML 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 724,702 Number of extensions: 28620 Number of successful extensions: 162 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 33 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)