BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0036.p
         (368 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein...   453   e-128
gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein...   120   2e-28
gi|300313012|ref|YP_003777104.1| phosphopantetheinyl transferase...    62   6e-11

>gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein]
           synthase II [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  453 bits (1165), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/258 (83%), Positives = 239/258 (92%)

Query: 6   RSRQERRVAVTGMAGISPIGNDWHSAQEHLRSYRNAVVRMPEWDEYNGLHTRLGAPAAAF 65
           R+R ERRV VTGMAGISPIG DW+SA   L+S  NAV RMP WDEY GLHTRLGAPAA F
Sbjct: 3   RARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAAEF 62

Query: 66  ELSERYNRKSTRSMGRVAVLATRASEWALADAGLLDDPLLRNGGIGIAYGSSAGTPSAVA 125
            LSERYNRK+TRSMGRVA++ATRASEWALADAGLLDDPLL++G +GIAYGSSAGTP+A+A
Sbjct: 63  SLSERYNRKTTRSMGRVALMATRASEWALADAGLLDDPLLKSGQLGIAYGSSAGTPNAIA 122

Query: 126 DFSMLFTEKSTRNINANTYLKMMAHTAPVNMGVFFGVTGRIITTSSACTSGSQGIGYAYE 185
           DF+M+F EK+TR+INANTYLKMMAHTAPVNMGVFFG+TGRIITTSSACTSGSQGIGYAYE
Sbjct: 123 DFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYAYE 182

Query: 186 TIRSGRQIAMIAGGSEELCASEAAVFDTLYATSVRNDTPAITPSPFDEQRDGLVLGEGAG 245
           TIRSGRQ+AM+AGG+EELCA+EAAVFDTLYATSVRNDTP +TPSPFD  RDGLVLGEGAG
Sbjct: 183 TIRSGRQLAMVAGGAEELCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLGEGAG 242

Query: 246 TLILEDLEHAQARGARIY 263
           +LILEDLEHAQARGA I+
Sbjct: 243 SLILEDLEHAQARGAHIH 260


>gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein]
           synthase II [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 123/258 (47%), Gaps = 7/258 (2%)

Query: 9   QERRVAVTGMAGISPIGNDWHSAQEHLRSYRNAVVRMPEWDEYNGLHTRLGAPAAAFELS 68
           +ERRV +TG+  ISP+GN+       ++  ++ +  + ++D      T        F + 
Sbjct: 5   RERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDA-TPFTTHFAGEVKGFNIE 63

Query: 69  ERYNRKSTRSMGRVAVLATRASEWALADAGLL--DDPLLRNGGIGIAYGSSAGTPSAVAD 126
           +    K  R M         A   A+ D+GL   D+   R   IG+  GS  G    + +
Sbjct: 64  DYIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDENAER---IGVMIGSGIGGLPLIEE 120

Query: 127 FSMLFTEKSTRNINANTYLKMMAHTAPVNMGVFFGVTGRIITTSSACTSGSQGIGYAYET 186
                T +  R I+       + +    N+ + FG+ G  +   +ACT+G   IG A   
Sbjct: 121 THAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARM 180

Query: 187 IRSGRQIAMIAGGSEELCASEA-AVFDTLYATSVRNDTPAITPSPFDEQRDGLVLGEGAG 245
           I  G    M+AGG+E   +      F +  A S RND PA    P+D+ RDG VLGEGAG
Sbjct: 181 IMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG 240

Query: 246 TLILEDLEHAQARGARIY 263
            ++LE+ EHA+ARGA+IY
Sbjct: 241 VMVLEEYEHAKARGAKIY 258


>gi|300313012|ref|YP_003777104.1| phosphopantetheinyl transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 6/109 (5%)

Query: 260 ARIYXARARARAREFVLGRMLLRHAARHLLGPAAR--HVDVAERKHHAPVLSFSSL--SP 315
           +R+   R   RA EF+LGR+L+R A   + G A R   ++V ER  +AP++  + +    
Sbjct: 24  SRLQGFRRAPRACEFLLGRLLMRRAL--MQGSAGRLEEIEVEERPGYAPIVRIAGVLADG 81

Query: 316 TPDFHFSISHSRGWIACMASTACAIGLDIENKMPARDVKELGAAAFDDA 364
                 S+SHSRGWIAC       IG+DIE  +  RD+  L   AF  A
Sbjct: 82  VAQPAVSLSHSRGWIACAIGMGTPIGVDIEAPLAGRDLATLAGHAFTPA 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 948,127
Number of extensions: 34461
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 3
Length of query: 368
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,207,925
Effective search space: 339426925
Effective search space used: 339426925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)