BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0032.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311173|ref|YP_003775265.1| D-aminopeptidase [Herbaspirillu...   241   2e-65

>gi|300311173|ref|YP_003775265.1| D-aminopeptidase [Herbaspirillum
           seropedicae SmR1]
          Length = 280

 Score =  241 bits (616), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 130/156 (83%), Gaps = 9/156 (5%)

Query: 2   NILISVDIEGIAGVFHPEQTRPGNGEYERARRQMTEEA---------XGAGNIVVNDSHG 52
           NIL+SVDIEG+AGVFHPEQTR GNGEYERARR MTEEA          GA  I VNDSHG
Sbjct: 6   NILVSVDIEGVAGVFHPEQTRAGNGEYERARRWMTEEANAVIRGALAAGATAIKVNDSHG 65

Query: 53  SFRNLLPDLLHPDARVVLGKPRVLGMMGGVAGDVDAVMMVGYHSRSQTGGILAHTINSFA 112
            FRNLLPDLLHP AR+VLGKPRVLGMMGGV  D+DAVM+VGYHSR+Q  GILAHT NSFA
Sbjct: 66  GFRNLLPDLLHPQARMVLGKPRVLGMMGGVDHDIDAVMLVGYHSRAQGRGILAHTTNSFA 125

Query: 113 FSRVWLNGAELGEAGIYGALAGEYGVPVIFGSGDDG 148
           F+RVWL+G E+GEAG+YGALA E+G PVIFGSGDD 
Sbjct: 126 FARVWLDGQEMGEAGLYGALAAEHGAPVIFGSGDDA 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,286
Number of extensions: 25613
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)