BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0031.p
         (351 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311172|ref|YP_003775264.1| L-aminopeptidase/D-esterase [He...   427   e-121

>gi|300311172|ref|YP_003775264.1| L-aminopeptidase/D-esterase
           [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score =  427 bits (1099), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/338 (65%), Positives = 257/338 (76%), Gaps = 6/338 (1%)

Query: 7   PHIGRLPAGPADSIADVPGVTVGHCTLNYGAIQTGVTVVRPHGGDLFRQKVPAAAVTFNG 66
           PHIGRLPAGP +SI DV GV VGHCTL+ GA+QTGVTV+ PH G+LF  K+PAA    NG
Sbjct: 6   PHIGRLPAGPRNSITDVAGVRVGHCTLDDGAVQTGVTVIAPHPGNLFTHKLPAAVAVING 65

Query: 67  FGKSVGLMQVEELGVLETPIALTNTFAVGAVAIAQTRAAVADNPGIGRSLPSVNPLVFEC 126
           FGKS GL+Q+EELG LETPIAL+NTFAVGA+  AQ R  +  NP  GRSLP+VNPLV EC
Sbjct: 66  FGKSAGLVQLEELGTLETPIALSNTFAVGALLEAQIRHTLRANPECGRSLPTVNPLVLEC 125

Query: 127 NDGYLNDMQAFAVEEQHYRQALDNASGTVVQGAVGAGRGMSCFDLKGGIGSASRKVAIGS 186
           NDGYLND+Q  AV+  H+  AL   S  VVQGAVGAGRGMS F+LKGGIG+ASR V +G 
Sbjct: 126 NDGYLNDLQRMAVQAAHFEAALQALSEEVVQGAVGAGRGMSSFELKGGIGTASRCVVLGK 185

Query: 187 AE--YTVGALVLANFGKLPDLVVDGERLGKTLKCLQKRFDEPEKGSIIMLIATDAPLDAR 244
           A   +TVGALVL+NFG+LP+L++ GE LG  L         PEKGSIIM++ATDAPLDAR
Sbjct: 186 AAQGFTVGALVLSNFGRLPELILAGEPLGAQLAGQGGSDSAPEKGSIIMILATDAPLDAR 245

Query: 245 QLRRLAGRAGVGLARTGSVYGHGSGDIALAFSTAQTVPHMADAASPALHFSCLHDNLLDP 304
           QL+RLA RAG GLARTGS YGHGSGDIALAFSTAQ +   AD    AL    L D+LLDP
Sbjct: 246 QLKRLATRAGAGLARTGSAYGHGSGDIALAFSTAQQIESEADCVQMAL----LADHLLDP 301

Query: 305 FFYAVADSTEQAILNALFAAEAVKGRDGHQRRSLSDLL 342
            F+A ADS EQAI++AL AA+ V+GRDGH R SL + L
Sbjct: 302 LFHAAADSVEQAIVHALLAAQTVRGRDGHVRMSLRERL 339


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,055,951
Number of extensions: 42530
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,212,660
Effective search space: 321354900
Effective search space used: 321354900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)