BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0028.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter perip...   251   2e-68

>gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 523

 Score =  251 bits (640), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 137/152 (90%)

Query: 1   LKIIQFLQQQLAQVGIKVKVQAMEAGQRVEKVESAPNPDTAPVRLYYAGWSSSTGEADWG 60
           +KI+QFLQQQLAQVGIK K+QA+EAGQRVE+VES  +P TAPVRL Y GWSSSTGEADW 
Sbjct: 370 VKIVQFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPVRLLYIGWSSSTGEADWA 429

Query: 61  LRPLLASEAFPPKLFNTAYYKSDKVDSDIAQALTVTDRTQKAALYKDAQTEIWKDAPWAF 120
           LRPLLASE+FPP+L+NTAYYK+DKVD+DIA+ALT+T+R  K ALYKDAQ EIWKDAPWAF
Sbjct: 430 LRPLLASESFPPRLYNTAYYKNDKVDADIAKALTLTERKDKEALYKDAQQEIWKDAPWAF 489

Query: 121 LVTEKVLYARSKNLKGVYVMPDASFNFDEIEL 152
           LVTEK+LYAR+KNLKGVYVMPD +  F+ IEL
Sbjct: 490 LVTEKLLYARNKNLKGVYVMPDQAIEFENIEL 521


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 444,462
Number of extensions: 16502
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)