BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0027.p (512 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter perip... 513 e-146 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 370 e-103 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 131 1e-31 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 116 4e-27 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 112 1e-25 >gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 523 Score = 513 bits (1321), Expect = e-146, Method: Compositional matrix adjust. Identities = 250/306 (81%), Positives = 276/306 (90%) Query: 191 GGQRQRIXALGAIGTTMQFAAVHAWAAKSVTLAVASTFTTMDPYDANDTLSLAVTKSFYQ 250 G + A+ A+GTT+QFAA HA+AAK+VTLAV STFTT+DPYDANDTLSL++ KSFYQ Sbjct: 9 GVSAAKWLAVAALGTTLQFAAAHAFAAKTVTLAVYSTFTTLDPYDANDTLSLSMAKSFYQ 68 Query: 251 GLFAFDKDLKLVNVLAEGYLVSKDGLEYTIRLRQGVKFHDGTTFKADAVKAVMDRVTNPD 310 GLF FDKD+KL+ VLAEGYLVSKDGLEYTIRL+QGVKF DGT FKADAVKAV DRVTNPD Sbjct: 69 GLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFQDGTVFKADAVKAVFDRVTNPD 128 Query: 311 NKLKRYVLFNRVARTEVLNDYTVKIVLKEPFSAFINVLAHPSAVMISPAALKQWGNKDIA 370 NKLKRY LFNR+A+TE+LNDYTVK+VLKEPFSAFINVLAHPSAVMISP ALKQ+GNKDIA Sbjct: 129 NKLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAFINVLAHPSAVMISPTALKQYGNKDIA 188 Query: 371 FHPVGTGPFKFVEWKQTDYMKAEKFAGYWKAGYPKVDEVIWKPVVDNNSRSAMMQTGEAN 430 FHPVGTGPFKFVEWKQTDY+K KF GYWK GYPKVDE+IWKPVVDNN+RSAMMQTGEA Sbjct: 189 FHPVGTGPFKFVEWKQTDYVKVAKFDGYWKPGYPKVDEIIWKPVVDNNARSAMMQTGEAQ 248 Query: 431 FTFPLPYEQAELLKGKGALDIVTGPSIIQRYMSMNVRQKPFDNVKVRQAINYAINKDALV 490 FT+PLPYEQA+LLK K LD+V PSIIQRYMSMN +QKPFDN KVR+AINYAINK ALV Sbjct: 249 FTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSMNTKQKPFDNPKVREAINYAINKQALV 308 Query: 491 KVAFSG 496 KVAF+G Sbjct: 309 KVAFNG 314 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 370 bits (949), Expect = e-103, Method: Compositional matrix adjust. Identities = 175/197 (88%), Positives = 185/197 (93%) Query: 1 MTGTDTPSRFGIAPSAEAKPDAIAEELQAASEIAQQRQPILKVTDLTTRFDVKSGIFGRV 60 M GTD P RFGIAP AEA+PD IA ELQA +EIA QRQPILKV DLTTRFDVKSGIFGRV Sbjct: 273 MRGTDKPLRFGIAPQAEARPDLIASELQAQAEIAAQRQPILKVRDLTTRFDVKSGIFGRV 332 Query: 61 KQRVHAVERVSFDLYAGETLAIVGESGCGKSTTGRSLLRLVEISGGKVEFGGRNLAELPR 120 +QRVHAVE+VSFDLYAGETLAIVGESGCGKSTTGRSLLRLV+I+GGKVEFGGR+LA+LPR Sbjct: 333 RQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRLVDIAGGKVEFGGRDLAQLPR 392 Query: 121 SELRELRRDIQFIFQDPFASLDPRLTVGYSIMEPMLVHGMNEGAQERVDALLTRVGLLPE 180 SELR+LRRDIQFIFQDPFASLDPR+TVGYSIMEPMLVHGM EGAQERVDALLTRVGL PE Sbjct: 393 SELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGMKEGAQERVDALLTRVGLTPE 452 Query: 181 HAQRYPHEFSGGQRQRI 197 H QRYPHEFSGGQRQRI Sbjct: 453 HGQRYPHEFSGGQRQRI 469 Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 22/178 (12%) Query: 35 QQRQPILKVTDLTTRFDVKSGIFGRVKQRVHAVERVSFDLYAGETLAIVGESGCGKSTTG 94 QQ Q +L V L+ RF ++ V AV +SF + GETLAIVGESG GKS + Sbjct: 2 QQPQRVLDVNHLSVRFSTS-------ERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSS 54 Query: 95 RSLLRLVEISGGKVEFGGR----------NLAELPRSELRELR-RDIQFIFQDPFASLDP 143 +++RL+E GGK+ G +LA+ + +R +R +I IFQ+P SL+P Sbjct: 55 LAIMRLIEHGGGKIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNP 114 Query: 144 RLTVGYSIMEPMLVH-GMNEGAQERVDALLTRVGLLPEHAQ---RYPHEFSGGQRQRI 197 TVG I E + +H G+ A + + + +PE + R+PH+ SGG RQR+ Sbjct: 115 VFTVGEQIAESIRLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRV 172 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 129/262 (49%), Gaps = 32/262 (12%) Query: 41 LKVTDLTTRFDVKSGIFGRVKQRVHAVERVSFDLYAGETLAIVGESGCGKSTTGRSLLRL 100 L+ L + +K G F K+ HAV+ V L GETL IVGESG GKST G +LLRL Sbjct: 269 LQAERLRCTYHIKQGWFA--KRAFHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRL 326 Query: 101 VEIS-GGKVEFGGRNLAELPRSELRELRRDIQFIFQDPFASLDPRLTVGYSIMEPMLVHG 159 S G + F G ++E P+ ELR LR +Q +FQDPFASL PR TV + E + +H Sbjct: 327 SAASVAGSIRFDGVPISERPQRELRPLRSRMQVVFQDPFASLSPRRTVEQIVGEGLELHH 386 Query: 160 MNEGAQERVDAL---LTRVGLLPEHAQRYPHEFSGGQRQRIXA----------------L 200 + A+++ A+ L VGL +RYPHEFSGGQRQRI Sbjct: 387 PDRSAEQQRQAIVAALEEVGLSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPT 446 Query: 201 GAIGTTMQFAAVHAWAAKSVTLAVASTFTTMDPYDANDTLSLAVTKSFYQGLFAFDKDLK 260 A+ T+Q + A +A F T D LAV ++ + KD K Sbjct: 447 SALDVTVQQQVLQLLAELQRRHGLAYLFITHD---------LAVVQAMAHQVIVM-KDGK 496 Query: 261 LVNVLAEGYLVSKDGLEYTIRL 282 +V A ++ + EYT RL Sbjct: 497 VVESGATAQVLQQPQQEYTRRL 518 Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 18/164 (10%) Query: 40 ILKVTDLTTRFDVKSGIFGRVKQRVHAVERVSFDLYAGETLAIVGESGCGKSTTGRSLLR 99 +L+V +LT RF V+RVSF + GE A+VGESG GK+ + ++++ Sbjct: 5 LLEVNNLTVRFGDTV-----------VVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQ 53 Query: 100 LVEIS--GGKVEFGGRNLAELPRSELRELR-RDIQFIFQDPFASLDPRLTVGYSIMEPML 156 L + + G + G+++ +++++R D+ IFQ+P +L+P T+G I E ++ Sbjct: 54 LNQDARYEGSILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLM 113 Query: 157 VH-GMNEGAQERVDALLTRVGLLPEHAQR---YPHEFSGGQRQR 196 H G+N R L +PE A+R YPHE SGGQRQR Sbjct: 114 HHEGLNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQR 157 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/170 (41%), Positives = 93/170 (54%), Gaps = 2/170 (1%) Query: 65 HAVERVSFDLYAGETLAIVGESGCGKSTTGRSLLRLVEISGGKVEFGGRNLAELPRSELR 124 HA+++V + GE + +VGESGCGKST GR L++ S G+V GR+ A L E Sbjct: 43 HALDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSDGQVLVNGRDRASLSSREEA 102 Query: 125 ELRRDIQFIFQDPFASLDPRLTVGYSIMEPMLVHGMNEG-AQERVDALLTRVGLLPEHAQ 183 E R +Q IFQ+P+ASL+PRL + + E V+G EG + V L R GL P Sbjct: 103 EARLQVQMIFQNPYASLNPRLRIDQIVGEAAQVNGKVEGDLDDYVCQQLLRAGLDPALRD 162 Query: 184 RYPHEFSGGQRQRIXALGAIGTTMQFAAV-HAWAAKSVTLAVASTFTTMD 232 RYPH+FSGGQRQRI A+ Q A AA V++ MD Sbjct: 163 RYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFMD 212 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/161 (44%), Positives = 99/161 (61%), Gaps = 10/161 (6%) Query: 41 LKVTDLTTRFDVKSGIFGRVKQRVHAVERVSFDLYAGETLAIVGESGCGKSTTGRSLLRL 100 L++ LT + +K G+F Q + AV VS LY GETL +VGESGCGKST + LL L Sbjct: 16 LELCALTKVYPLKRGLFQPPGQ-LKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGL 74 Query: 101 VEISGGKVEFGGRNLAELPRSELRELRRDIQFIFQDPFASLDPRLTVGYSIMEPMLVHGM 160 + + G V G+ E+ +E + R IQ IFQDP++SL+PR TV + P+ +HG+ Sbjct: 75 LPPTSGNVLINGQ---EVDPTERKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGI 131 Query: 161 NEGAQ--ERVDALLTRVGLLPE--HAQRYPHEFSGGQRQRI 197 A+ +V +L VG +PE HAQ YP++ SGGQRQR+ Sbjct: 132 GNAAERNRQVKDILDLVG-MPERTHAQ-YPNQLSGGQRQRV 170 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,566,814 Number of extensions: 63339 Number of successful extensions: 445 Number of sequences better than 1.0e-08: 51 Number of HSP's gapped: 417 Number of HSP's successfully gapped: 54 Length of query: 512 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 423 Effective length of database: 1,198,455 Effective search space: 506946465 Effective search space used: 506946465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)