BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0021.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311166|ref|YP_003775258.1| transcription regulator protein...   244   5e-66

>gi|300311166|ref|YP_003775258.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  244 bits (623), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 136/162 (83%)

Query: 1   MTIDELSEAAGISLATANRFAHALGFDGYAPFRNALVADFASSLAPVEKMRHEVQKSATS 60
           MTIDELSEAAGIS+ATANRFAHALGFDGYA FR ALV+DFA++LAPVEK+R+EVQ++ATS
Sbjct: 48  MTIDELSEAAGISVATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLRNEVQRAATS 107

Query: 61  VEIISAALSNDIRNIEATRQSLVPEHCDQAVEMILKAERIFVIGFGASAFLAGIMVHALE 120
            EI++AA  +DI NIEATR+ L    C+ AV+MIL AERIF+ GFGASA+LAG+M HALE
Sbjct: 108 AEIMAAAFDSDIANIEATRRMLTASDCEAAVDMILAAERIFITGFGASAYLAGLMAHALE 167

Query: 121 PFCRTVLSGVHPGGPSQTGRQFFKLDERDVVIAMAYPRYATD 162
           P+ RTV S    GGPSQ GRQFFKLD RD+VI M +PRYA D
Sbjct: 168 PYVRTVSSVALAGGPSQAGRQFFKLDNRDLVIPMVFPRYAAD 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 701,760
Number of extensions: 26509
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)