BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0010.p
         (92 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313028|ref|YP_003777120.1| two component response regulato...    63   4e-12

>gi|300313028|ref|YP_003777120.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score = 63.2 bits (152), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 49/80 (61%)

Query: 11  PRTLLLVDDEINILSALKRLLRQDKYDIVTANNGQEALEALKNGPVDVIVTDQRMPGMTG 70
           P  +LLVDDE +ILSALKR  R   Y ++ A + + ALE +    VD++++D RMPGM G
Sbjct: 22  PPCVLLVDDEQSILSALKRTFRPQGYRLIMATSAEAALEMMAASEVDLVISDMRMPGMNG 81

Query: 71  VEFLLKXRSRGKLMTLIKLT 90
            +FL K R +      I LT
Sbjct: 82  AQFLAKVRQQWPSTMRILLT 101


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 241,180
Number of extensions: 7954
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 92
Length of database: 1,619,870
Length adjustment: 62
Effective length of query: 30
Effective length of database: 1,326,300
Effective search space: 39789000
Effective search space used: 39789000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)