BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0049.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313199|ref|YP_003777291.1| lipoprotein [Herbaspirillum ser...   286   8e-79

>gi|300313199|ref|YP_003777291.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 205

 Score =  286 bits (732), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 135/201 (67%), Positives = 163/201 (81%), Gaps = 4/201 (1%)

Query: 2   SQSLPSFSAPRALLAGAFALGCAATSLPAMA----QQSDEFSWWQSIKNHASEIADKGDD 57
           + S P    P + L     L   AT+  A+A     + +++S WQ  K+HA+ I ++G+ 
Sbjct: 5   TSSHPRTPTPASPLRAWRRLAMVATAAIALAPVAHAEDNQYSLWQQTKDHAANIWNQGES 64

Query: 58  AIYVSGLAHHGRSTYTKEKLDQLNEHAWGLGYGKTMRNERGNDESLYGFVLKDSHRHPQI 117
            +Y+SG+AHHGR TYTKEKL++LNEHAWGLGYGKT+RNE+G+DESLYGFVLKDSHRHPQ 
Sbjct: 65  ELYLSGVAHHGRGTYTKEKLNELNEHAWGLGYGKTLRNEKGDDESLYGFVLKDSHRHPQY 124

Query: 118 MAGYAYEWVYPIGRTPLELGIGGTAMLMSRQDYFGGVPFPVPLPLASIGTKKAKVMFAYV 177
           MAGYAYEWV+PI +T LE+G+GGTAMLMSRQDYF  VPFPVPLPLASIGTKK K+MFAYV
Sbjct: 125 MAGYAYEWVFPIAKTGLEVGLGGTAMLMSRQDYFHSVPFPVPLPLASIGTKKGKIMFAYV 184

Query: 178 PRLSSNKNNGDVLLVFGRIEM 198
           PRLS+NKNNGDVLL+FGRIEM
Sbjct: 185 PRLSANKNNGDVLLIFGRIEM 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 633,283
Number of extensions: 26719
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)