BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0042.p
         (247 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313204|ref|YP_003777296.1| formamidopyrimidine-DNA glycosy...   420   e-119

>gi|300313204|ref|YP_003777296.1| formamidopyrimidine-DNA
           glycosylase [Herbaspirillum seropedicae SmR1]
          Length = 273

 Score =  420 bits (1079), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/248 (83%), Positives = 220/248 (88%), Gaps = 1/248 (0%)

Query: 1   VVTRHSGLRWPFPSDLNERLAGHVIRSTGRRGKYLLINFDHGTLIVHLGMSGHLRVLPPG 60
           VV RHSGLRWPFP  L   L G VIRSTGRRGKYLLI+FDHGTLIVHLGMSGHLR+LPPG
Sbjct: 26  VVMRHSGLRWPFPVGLEALLRGRVIRSTGRRGKYLLIHFDHGTLIVHLGMSGHLRILPPG 85

Query: 61  IAPQKHDHFDLVVGKPV-RNIMRXRFGAVLWHDNADGDIEEHMLLRGLGLEPLEDKFSAR 119
           IAPQKHDHFDL VG  V R     RFGA+LWHD ADG +EEH+LLR LGLEPLE+KF+AR
Sbjct: 86  IAPQKHDHFDLEVGGQVMRMTDPRRFGAILWHDLADGAVEEHLLLRSLGLEPLEEKFTAR 145

Query: 120 ELHRQTRNRSAPIKQVLLAGDIVVGVGNIYASESLFKAGINPKTAAGRISLPRYEKLVVA 179
           EL RQTR RSAPIKQVLLAGDIVVGVGNIYASESLFKA I+PKTAAG+ISLPRYE+L  A
Sbjct: 146 ELFRQTRGRSAPIKQVLLAGDIVVGVGNIYASESLFKARIHPKTAAGKISLPRYERLAQA 205

Query: 180 IRETLAAAIEQGGSSLRDFIAVNGQSGYFQQSYFVYNRTGLACRICTTPIRQIKQGQRST 239
           IRETLAAAIEQGGSSLRDFIAVNGQSGYFQQ+YFVYNRTG ACRIC TPIRQIKQGQRST
Sbjct: 206 IRETLAAAIEQGGSSLRDFIAVNGQSGYFQQNYFVYNRTGEACRICATPIRQIKQGQRST 265

Query: 240 FYCVVCQR 247
           FYCV CQ+
Sbjct: 266 FYCVSCQK 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 808,433
Number of extensions: 34523
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,226,865
Effective search space: 201205860
Effective search space used: 201205860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)