BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0041.p
         (588 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [...   783   0.0  
gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [...    56   8e-09

>gi|300313205|ref|YP_003777297.1| TPR repeat containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/584 (66%), Positives = 480/584 (82%), Gaps = 2/584 (0%)

Query: 5   CASLQQPSETDAAPVASGKKQTLVKASPARKGQAKAKAQQPEDVVPPVELSEEILFKILS 64
           CAS Q PS   A   A+  +++    + ARK   KAK QQ ED +P VELSE+IL+K+L+
Sbjct: 17  CASFQ-PSGEKANATAAQDQKSASAKAAARKKTPKAKVQQQEDALPAVELSEDILYKVLT 75

Query: 65  SEIAFQRGQWQAAYVTLLGTAQQTRDPRLAKRAAEIALAARRPNEALAAVRLWTELAPHS 124
           +EIAFQRGQWQ AYVT+L  AQQTRDPRLAKRAAE+A+ AR+P+EAL AVRLWTELAPHS
Sbjct: 76  AEIAFQRGQWQPAYVTMLAAAQQTRDPRLAKRAAEMAVTARQPSEALVAVRLWTELAPHS 135

Query: 125 DEALQNYLGLIMLGDNIGEIQPLLTQRLAEAAPQARGPMILQIQRLLSRARDKTAAFNIL 184
           DEALQNYLGLIML D++ EI+PLLTQRLA+AAPQARGPM+LQIQRLL RA+DK A+F IL
Sbjct: 136 DEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMLLQIQRLLVRAKDKQASFAIL 195

Query: 185 QAVTAPYPALIETHLALSQGAFANRDAVRAREEANQALKLKPDSELAILTLAQVTQDPTE 244
           Q ++ PY  L+ETHLAL+QGAF+  D   A+ EA  A+K+KPDSELA+LT AQV  D  E
Sbjct: 196 QKISQPYGDLMETHLALAQGAFSVGDTTYAQREARAAMKIKPDSELAVLTAAQVAPDNKE 255

Query: 245 AMKLVADFLKKYPDAREVRVAYARGLVEQKQFEQARSQFQTLLKDDQEDLTTLFALGILN 304
           A KLV +FL+KYPDAREVRVAYAR LVEQK ++ AR+QF+ LLK+D ED TTLFALG+L+
Sbjct: 256 ATKLVTEFLRKYPDAREVRVAYARTLVEQKDYKDARTQFEALLKEDGEDPTTLFALGVLS 315

Query: 305 VQTNRLPEAETYLKRYLQVLATQPEDERDPTQALLLLSQIAEERNDIPAALKWLEQVEPG 364
            QT++L +AE YL+RYLQVL+  PE++RDP+QA+LLLS+IAEER DI  AL++L++ EPG
Sbjct: 316 AQTDQLKDAEYYLQRYLQVLSAMPEEDRDPSQAILLLSRIAEERRDIDGALRYLDRGEPG 375

Query: 365 -EAYVNVQIRRGQLLAKRGDINGARAVLQQAQSEAGNDREQLQLIQGEAQILRDSERYQD 423
            E YVN+Q+RR QLLA++ DI GAR  L+ AQSE+ ND EQLQL+Q E+ +LRD+ R Q+
Sbjct: 376 TEGYVNIQVRRAQLLARKSDIEGARKALEAAQSESTNDGEQLQLLQAESALLRDANRNQE 435

Query: 424 AADVLSAGLKRFPESTDLLYDYAMATDKTGNYKDMETALRKIIELAPNNQHAYNALGYSF 483
           AADV+ AGL+RFP +TDLLYDYAM  DK G Y +ME +LR++I+LAP NQHAYNALGYS 
Sbjct: 436 AADVIKAGLERFPNNTDLLYDYAMVLDKLGKYDEMEASLRRVIKLAPGNQHAYNALGYSL 495

Query: 484 ADRNIRLPEAVALIKKAVQLAPEDAFIADSLGWAEFRLGNLDEAEKELRRAYGLRPDPEI 543
           ADRN+RLPEA+ LI+KA ++APEDAFIADSLGW  FR+G LDEAE ++RRAYGLRPD EI
Sbjct: 496 ADRNVRLPEALELIRKAAEMAPEDAFIADSLGWVLFRMGRLDEAETQMRRAYGLRPDAEI 555

Query: 544 GIHLGEILWARGKQDEAKRLWREAQSKDPKNDVLKSTLDRLKVQ 587
           G+HLGE+LW RGKQDEA+++WR+   KDP N+VLKSTL RL V+
Sbjct: 556 GVHLGEVLWTRGKQDEARKIWRDVAQKDPANEVLKSTLTRLNVK 599


>gi|300311388|ref|YP_003775480.1| TPR repeat containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 658

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 25/305 (8%)

Query: 244 EAMKLVADFLKKYPDAREVRVAYARGLV--EQKQFEQARSQFQTLLKDDQEDLTTLFALG 301
           EA  L    L + P    V   +ARGLV   + +F  A +  +  ++ D E+   +  L 
Sbjct: 42  EAKALCMAVLSRNPTL--VFANHARGLVAMHEGKFADAEAYLRKAIEADPENAEYMSNLA 99

Query: 302 ILNVQTNRLPEAETYLKRYLQVLATQPEDERDPTQALLLLSQIAEERNDIPAALKWLEQV 361
              +  +R+ EA    +  +++       +RD   + + L+    E+ND  A++ + E  
Sbjct: 100 GTVLSQDRIDEAIALYEHAIRI-------DRDHRASRIGLANALHEKNDPEASVAYFEDA 152

Query: 362 ---EPGEAYVNVQIRRGQLLAKRGDINGARAVLQQA---QSEAGNDREQLQLIQGEAQIL 415
              EP        + R  +  KR   N A AV+ ++   Q         L    GEA   
Sbjct: 153 VKREPNAPGPLSHLGRALIECKR--YNEAVAVILKSLELQISFAPSHTAL----GEA--F 204

Query: 416 RDSERYQDAADVLSAGLKRFPESTDLLYDYAMATDKTGNYKDMETALRKIIELAPNNQHA 475
              E Y++A +     +   P+ T      A +  K     +    L ++IE+AP + +A
Sbjct: 205 HAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAPKDPNA 264

Query: 476 YNALGYSFADRNIRLPEAVALIKKAVQLAPEDAFIADSLGWAEFRLGNLDEAEKELRRAY 535
           Y  LG S+   + R  +A+ +  KA+++  + A   +++G  +   G+L++A    R+A 
Sbjct: 265 YVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKAL 324

Query: 536 GLRPD 540
            LRP+
Sbjct: 325 ELRPN 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,655,225
Number of extensions: 65020
Number of successful extensions: 339
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 2
Length of query: 588
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 498
Effective length of database: 1,193,720
Effective search space: 594472560
Effective search space used: 594472560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)