BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0036.p (561 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313210|ref|YP_003777302.1| protease with the C-terminal PD... 806 0.0 >gi|300313210|ref|YP_003777302.1| protease with the C-terminal PDZ domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/518 (74%), Positives = 440/518 (84%), Gaps = 2/518 (0%) Query: 25 MTTPIRYSITSNDCAAHVFDVTVTVDAPAADGQVFSLPAWIPGSYMIREFARNIIQLRGE 84 M TPIRY ITS D A+H+FDV+VTVD PAA+GQVFSLPAWIPGSYMIREF +NI+QLRGE Sbjct: 1 MATPIRYRITSLDPASHLFDVSVTVDTPAAEGQVFSLPAWIPGSYMIREFGKNIVQLRGE 60 Query: 85 ASGKKVILRKLDKHTWKAAPCAGPLTLTYQVYAWDLSVRTAHLDQTHAFFNGTSVFLRVE 144 +G+KV ++KLDKHTW+AAPC G LTL YQVYAWDLSVRTAHLD+TH FFNGTSVFL Sbjct: 61 CNGRKVGVKKLDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFLCAH 120 Query: 145 GQEQSQHVVDIRRPAGDAYKRWRVATSLPELKARRYGFGTYVAADYDELIDHPVELGTFA 204 G EQ +HVV++ RP G+ +KRWRVAT++ ELKA+RYGFGTYVA +YDELIDHPVE+G FA Sbjct: 121 GFEQGEHVVELVRPEGEEFKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVEIGDFA 180 Query: 205 LATFTAHGVPHDVVITGQVPNLDLPRLSADLQKICEAQIAFFEPKSKRAPMSRYVFMTMV 264 LATF AHGVPHDVVITG+VPNLDL RL DL+KICEAQIAFFEP+SKRAPM RYVFMT+ Sbjct: 181 LATFQAHGVPHDVVITGRVPNLDLARLCEDLKKICEAQIAFFEPRSKRAPMDRYVFMTLA 240 Query: 265 VGDGYGGLEHRASTALVCARSDLPVKGKSELSDGYRTYLGLCSHEYFHTWNVKRIKPAAF 324 VGDGYGGLEHRASTAL+CAR+DL VKGK E +DGYRTYLGLCSHEYFHTWNVKRIKPA F Sbjct: 241 VGDGYGGLEHRASTALICARADLSVKGKPEQTDGYRTYLGLCSHEYFHTWNVKRIKPAVF 300 Query: 325 APYDLREEGYTSLLWLFEGFTSYYDDLFLVRTGLIDEAAYLGMLAKTINGVLRGSGRRKQ 384 APYDLR+E YTSLLWLFEGFTSYYDDLFLVRTG+ID YL ++ KT+ GVLRG+GR+KQ Sbjct: 301 APYDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDTDNYLKLVGKTVTGVLRGTGRKKQ 360 Query: 385 SVAESSFDAWVKYYRQDENAPNAIVSYYTKGSLVALALDLTIRSETKGRKSLDDIMLALW 444 SVAESSFDAWVKYYRQDENA NAIVSYYTKGSLVAL LDLTIR++T+GR+SLDD+M LW Sbjct: 361 SVAESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLTIRTQTRGRRSLDDVMRGLW 420 Query: 445 QQYGRQFYTRNGGRGLGEEEAEALFEAVSGVKLKRFFDRYIRGTEDLPFSQLLPEMAIKL 504 +YGR FY +G+ E+E A+ E +SG LKRF DR+IRGTED+PF LLP + Sbjct: 421 VRYGRDFY-EGKQQGVPEDEILAIMEELSGADLKRFHDRHIRGTEDVPFEDLLPAFGVAY 479 Query: 505 E-DVRKDRKPSLGLRVVRDGGDAKVANVYEGGAGHRAG 541 E +V D KP LG R+ ++GGDAK+A VYEGG AG Sbjct: 480 EANVPADAKPWLGARIGKEGGDAKLAAVYEGGPAMLAG 517 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,835,860 Number of extensions: 77610 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 1 Length of query: 561 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 471 Effective length of database: 1,193,720 Effective search space: 562242120 Effective search space used: 562242120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)