BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0035.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313211|ref|YP_003777303.1| glutamate synthase small subuni...   394   e-111

>gi|300313211|ref|YP_003777303.1| glutamate synthase small subunit
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 487

 Score =  394 bits (1013), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/213 (88%), Positives = 198/213 (92%)

Query: 9   GHDVTVFEKNDRVGGLLRYGIPDFKMEKSHIDLRVEQMQAEGVVFRTSTLVGKDFPANIT 68
           GHDVTVFEKNDRVGGLLRYGIPDFKMEKSHIDLRVEQM+AEGV FRT   VGKDFP  + 
Sbjct: 166 GHDVTVFEKNDRVGGLLRYGIPDFKMEKSHIDLRVEQMKAEGVTFRTGVFVGKDFPETVN 225

Query: 69  NWSKETVSPDDLKKDFDAVVIAGGAELPRDLPVPGRELKGVHFAMEFLPLQNKVNAGDKL 128
           NWSKETV+P++LKK+FDAVVIAGGAE PRDLPVPGRELKGVHFAM+FLPLQNKVNAGDKL
Sbjct: 226 NWSKETVTPEELKKEFDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKL 285

Query: 129 KGQIMATDKHVVVIGGGDTGSDCVGTSNRHGAASVAQFELMPQPPESENKPMVWPYWPTK 188
           K QIMAT K+VVVIGGGDTGSDCVGTSNRHGAASV QFELMPQPPESENKP+VWPYWP K
Sbjct: 286 KNQIMATGKNVVVIGGGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIK 345

Query: 189 LRTSSSHEEGCDRDWAVATKRLEGKNGKVEKLI 221
           LRTSSSHEEGC RD+AV TKRLEGK GKVEKLI
Sbjct: 346 LRTSSSHEEGCQRDFAVTTKRLEGKGGKVEKLI 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 735,322
Number of extensions: 31133
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)