BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0032.p
         (682 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313213|ref|YP_003777305.1| transposase IS200-like protein ...   350   2e-97
gi|300313214|ref|YP_003777306.1| transport protein [Herbaspirill...   193   3e-50
gi|300313217|ref|YP_003777309.1| LysR family transcription regul...    96   9e-21

>gi|300313213|ref|YP_003777305.1| transposase IS200-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  350 bits (899), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 187/223 (83%)

Query: 458 MARLPRLVVPYQPHHIIQRGHDGQLVFRDTADHTVFLDWLKEGAKRFKVAIHAYVLMPDH 517
           MARLPRLVVP+QPHHIIQRGHDG +VFRD  DH  FL WLK+ A++FKVA+HAYVLMPDH
Sbjct: 1   MARLPRLVVPHQPHHIIQRGHDGLIVFRDADDHLAFLGWLKDAARQFKVAVHAYVLMPDH 60

Query: 518 IHLLATPVDGDGLARMMQWVGRYYVPYINQKYRRSGTLWQGRYKATVLDAERYLLPCSRY 577
           +HLLATP D  GLARMMQWVGR+YVPY NQK+ RSGTLWQGRY+ATV+D + YLLP  RY
Sbjct: 61  LHLLATPSDDQGLARMMQWVGRHYVPYFNQKHGRSGTLWQGRYRATVIDPDLYLLPVCRY 120

Query: 578 IELNPVRNGLVGSALDYPWSSYMHHIGAKPDPLITDHSVYWALGNTPFDREIAYKLQAEQ 637
           IELNPVR+GL  S  DYPWSSYMHHIGAK D LITDH  YW++GNTPFDREIAY+   E+
Sbjct: 121 IELNPVRSGLTVSPGDYPWSSYMHHIGAKQDGLITDHPQYWSIGNTPFDREIAYRQLTEE 180

Query: 638 SLGQAEVEAISQATLKGWALGAEEYKSGLEKQVSRRVSPAKRG 680
            L  AEV+ I+ ATLKGWALG++E+K GLE+   RRVSPAKRG
Sbjct: 181 GLPAAEVQRITDATLKGWALGSDEFKHGLERVTRRRVSPAKRG 223


>gi|300313214|ref|YP_003777306.1| transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 314

 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 319 VQAFA-GARARAGXTVKEALGWSVAWVMLALLFSGLLWWYLDHSIGREFANQKSLEFLSG 377
           V  FA G R     + +EALGWS  WV LA +F+GL+WWYLD  +GREFANQK  EFLSG
Sbjct: 15  VDMFALGGRNAHRVSPREALGWSAVWVSLAFVFAGLMWWYLDAHVGREFANQKGAEFLSG 74

Query: 378 YLIEKSLSVDNIFVFLVIFGYFAVPAEMQRRVLLYGVVGAIIMRAVMILLGAWLIAQFSW 437
           YLIEK+LSVDNIFVFL+IF YFAVP EMQRRVLLYGVVGAI+MRAVMILLGAW+IAQFSW
Sbjct: 75  YLIEKALSVDNIFVFLMIFSYFAVPPEMQRRVLLYGVVGAIVMRAVMILLGAWMIAQFSW 134

Query: 438 IMYLFGAFPV 447
           I+Y+FGAF V
Sbjct: 135 ILYVFGAFLV 144



 Score =  140 bits (352), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 78/84 (92%)

Query: 67  MYLFGAFLIVTGIKMLIFADKESDLNDNPLLKFLRKHMRISNEYDGEKFFTMRNGVRYFT 126
           +Y+FGAFL+ TG+KMLIFADKE+DL DNPLL++LR H++ISN+YDGEKF T  NGVRYFT
Sbjct: 136 LYVFGAFLVFTGVKMLIFADKEADLGDNPLLRWLRGHLKISNDYDGEKFTTRVNGVRYFT 195

Query: 127 PLMLVLILIEVTDLIFAVDSIPAI 150
           PLMLVL+LIE++D+IFAVDSIPAI
Sbjct: 196 PLMLVLLLIEISDVIFAVDSIPAI 219


>gi|300313217|ref|YP_003777309.1| LysR family transcription
          regulator [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 53/59 (89%)

Query: 1  VQSNVTTRIRQLEESVGVPLFIRDRKRLLLTPAGEVLLDYSERILGLVQEARQAVLPQG 59
          VQSNVTTRI+QLE+S+GVPLF+RDR+R++LT AGE LLDY+ERIL L QEARQAV PQ 
Sbjct: 37 VQSNVTTRIKQLEQSMGVPLFVRDRRRMVLTAAGEALLDYAERILDLAQEARQAVAPQS 95


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,000,222
Number of extensions: 80772
Number of successful extensions: 393
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 4
Length of query: 682
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 590
Effective length of database: 1,184,250
Effective search space: 698707500
Effective search space used: 698707500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 134 (56.2 bits)