BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0029.p
         (527 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillu...   850   0.0  

>gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 502

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/481 (85%), Positives = 438/481 (91%), Gaps = 1/481 (0%)

Query: 5   FTDPQAAVDRVIEIYESNTAILRDAFKLFAKGEVL-QDRVRACYPFVRITTEKVTHTDTR 63
           FTDP AA  RV+EIYE NTAILRDAF+ F+ G+ + Q RVRACYPFVRITTEK THTDTR
Sbjct: 8   FTDPDAAYARVLEIYEHNTAILRDAFRQFSSGQPMDQQRVRACYPFVRITTEKSTHTDTR 67

Query: 64  QSFGFVAGPGTYQTTLTRPTLFKNYLLSQFTLLLQNHQEPLEVGVSELPIPVHFAFAEGI 123
           QSFGFVAGPG YQTTLTRP LF  YLL+QF L+LQNH+ PLEVGVS++PIPVHFAF EGI
Sbjct: 68  QSFGFVAGPGCYQTTLTRPKLFHQYLLAQFRLILQNHEVPLEVGVSDMPIPVHFAFPEGI 127

Query: 124 HVEGDLDPEHLRLLPDVFDLPDLAEMDDRIVNGTYEVDNGGWRDGVHPLALFTGPRIDYS 183
           HVEG LDPEHLR LPD FDLPDLA MDDRI NGTYEVDNG WR+G HPLALFTGPRIDYS
Sbjct: 128 HVEGSLDPEHLRTLPDHFDLPDLATMDDRIANGTYEVDNGAWREGPHPLALFTGPRIDYS 187

Query: 184 LHRLRHYTATAPQHFQRYVLFTNYAFYVDEFVRMGRELMQPTDDPELRTYRQQYTAFVEP 243
           LHRLRHYTAT+P  FQRYVLFTNYAFYVDEFVR+GR LM+PTDDP+   YR+QYTAFVEP
Sbjct: 188 LHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQYTAFVEP 247

Query: 244 GNVITPNANVEGMKGVAGSGTAPVRQPQMPAYHLQRSDGSGITLVNIGVGPSNAKTITDH 303
           GNV T +AN EG +  A SG AP RQPQMPAYHLQR+DGSGITLVNIGVGPSNAKT+TDH
Sbjct: 248 GNVTTWSANQEGAETRAASGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNAKTVTDH 307

Query: 304 IAVLRPHGWIMLGHCAGLSSSQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALAEVQLAL 363
           +AVLRPHGW+MLGHCAGLS+SQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALAEVQLAL
Sbjct: 308 VAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALAEVQLAL 367

Query: 364 QDAVAGITQLEGYELKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDMESATVA 423
           QDAVA IT+L+GYELKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDMESATVA
Sbjct: 368 QDAVASITRLDGYELKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDMESATVA 427

Query: 424 ANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANRFYEQRVAQHLKIGIRALELLRNHGGQT 483
           ANGFRFRVPYGTLLCVSDKPLHGEIKLPGMAN FYEQRVAQHL+IGIRALELLRN+G + 
Sbjct: 428 ANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQIGIRALELLRNNGIEQ 487

Query: 484 V 484
           V
Sbjct: 488 V 488


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,770,017
Number of extensions: 78300
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 437
Effective length of database: 1,193,720
Effective search space: 521655640
Effective search space used: 521655640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)