BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0027.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   286   9e-79
gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   187   5e-49

>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  286 bits (731), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 138/150 (92%), Positives = 143/150 (95%)

Query: 7   HGTDTIEETAYFLDLTVHSKKPVVIVGSMRPSTAISADGPINLYNAVLLAGSQEAIGKGV 66
           HGTDTIEETAYFLDL V SKKPVVIVG+MRPSTAISADGPINLYNAVLLAGS+EAIGKGV
Sbjct: 36  HGTDTIEETAYFLDLVVKSKKPVVIVGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGV 95

Query: 67  LVTLNDQINAAREVTKTNTSTLDTFKTPELGFLGYIQGSKPFFYRQSTRKHTVDSEFDIS 126
           LVTLNDQINA REVTKTNTSTLDTFKTPELGFLGYIQGSKP+FYRQSTRK+TVD+ FDI 
Sbjct: 96  LVTLNDQINAGREVTKTNTSTLDTFKTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIM 155

Query: 127 KLDVLPQVDIVYGYANMNPIALNAFVAAGA 156
            LD LPQVDIVYGYANMNPIALNAFVAAGA
Sbjct: 156 NLDKLPQVDIVYGYANMNPIALNAFVAAGA 185


>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  187 bits (474), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/150 (60%), Positives = 117/150 (78%), Gaps = 1/150 (0%)

Query: 7   HGTDTIEETAYFLDLTVHSKKPVVIVGSMRPSTAISADGPINLYNAVLLAGSQEAIGKGV 66
           HGTDTIEETAYFL+L + S KPVV+VGSMRP TA+ ADG +NLY+AVL+AGS+EA GKG 
Sbjct: 118 HGTDTIEETAYFLNLVLKSDKPVVVVGSMRPGTALGADGALNLYDAVLVAGSKEAAGKGT 177

Query: 67  LVTLNDQINAAREVTKTNTSTLDTFKTPELGFLGYIQGSKPFFYRQSTRKHTVDSEFDIS 126
           LV +ND+I++ R+VTK+NT  ++TF++P  G LGY+  +K  FYR   R HT  +EFDI 
Sbjct: 178 LVVMNDEIHSGRDVTKSNTFKVETFRSP-YGPLGYVVENKLSFYRLPARPHTTQTEFDID 236

Query: 127 KLDVLPQVDIVYGYANMNPIALNAFVAAGA 156
           K+  LP+VDIVY Y N++  A +AFVAAGA
Sbjct: 237 KISSLPRVDIVYNYGNVSRTAYDAFVAAGA 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 443,909
Number of extensions: 16719
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)