BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0026.p
         (271 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesi...   139   3e-34

>gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 102/151 (67%), Gaps = 6/151 (3%)

Query: 1   MINRRTFL---SSATATAALAALGIPPEALAANRIKLGNPAPFSFDALIAQVRTAAQSPY 57
           M +RR FL    +    AAL+ALG+P  ALAA  I+   P PFSF  LI + R  A +PY
Sbjct: 2   MTSRRRFLCATGATATAAALSALGLPSGALAAQGIETSAPQPFSFAQLIERARQMASTPY 61

Query: 58  KPQNKPPAEILDKIDYEAHGKIRFNTDSSLFANGPGQFPVTFFHLGRFFQAPVHMYALEG 117
           +P    PA ILD+IDY+AHGKIRF  D + FA GPG FP+TFFHLG+FF+ PV M+ LEG
Sbjct: 62  QPAAAAPAAILDRIDYDAHGKIRFKPDRAAFATGPGPFPLTFFHLGKFFRVPVRMFLLEG 121

Query: 118 AGNN---AKAREILYDESYFDMPADSPARKL 145
           AG+     +ARE+ Y + YFDMPADSPA  L
Sbjct: 122 AGDATAPTQARELRYRDDYFDMPADSPAHAL 152


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.126    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 592,844
Number of extensions: 21287
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,222,130
Effective search space: 228538310
Effective search space used: 228538310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)