BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0025.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesi...   283   9e-78
gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesi...   185   2e-48
gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis...   179   1e-46

>gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score =  283 bits (723), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 143/169 (84%)

Query: 1   MDVDCALFLRQDVGRLGIAPATSMMWYSEAVKGTGADWRPEVHDSDGLAIWNGNGEHIWR 60
           M++D  LFLR+DV RLG+APATSM WYSE VKGTG DWRPEVHDSDGLAIWNG GEH+WR
Sbjct: 264 MEIDKQLFLRRDVERLGLAPATSMYWYSETVKGTGVDWRPEVHDSDGLAIWNGAGEHLWR 323

Query: 61  PLNNPARITASAFGDNNPRGFGLLQRDRNFDHYQDGVHYERRPSLWVEPLEGWGEGSVQL 120
           PLNNP R  AS+F D  PRGFGL+QRDR+FDHY DGVHYERRPSLWVEPL  WGEG VQL
Sbjct: 324 PLNNPPRTIASSFADRQPRGFGLMQRDRDFDHYLDGVHYERRPSLWVEPLGDWGEGQVQL 383

Query: 121 IEIPTDDEIHDNIVAMWVPKAKAAAGSSYRLRYRLHWMKDEPFPSPLAR 169
           IE+ TDDEIHDNIVAMWVPKA A AG  Y+LRYRLHW  + PFPS LAR
Sbjct: 384 IELRTDDEIHDNIVAMWVPKAAARAGDRYQLRYRLHWQSETPFPSALAR 432



 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 32/39 (82%)

Query: 171 LTVDGDDPVDLRLYLRHKNQTLSETWLYQYQPFKTRGIY 209
           LT +G++PV+LRL+LRH+ Q LSETWL+QY PF  R +Y
Sbjct: 506 LTAEGEEPVELRLFLRHQGQALSETWLFQYHPFIAREVY 544


>gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesis G
           protein [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  185 bits (470), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 1   MDVDCALFLRQDVGRLGIAPATSMMWYSEAVKGTGADWRPEVHDSDGLAIWNGNGEHIWR 60
           MDV   L+LR +V +LGIAP TSM  + E   G   D+RPEVHDSDGLA+ +G GE +WR
Sbjct: 263 MDVKAQLYLRSNVTKLGIAPLTSMFLFGENQPGPADDFRPEVHDSDGLAMQSGTGEWLWR 322

Query: 61  PLNNPARITASAFGDNNPRGFGLLQRDRNFDHYQD-GVHYERRPSLWVEPLEGWGEGSVQ 119
           PL NP R+  ++F  +NP GFGL+QRDR+F HY+D   +Y+ RPS WVEP   WG G V+
Sbjct: 323 PLVNPKRLLVTSFSFDNPLGFGLMQRDRSFSHYEDLDYNYQARPSAWVEPKGKWGSGRVE 382

Query: 120 LIEIPTDDEIHDNIVAMWVPKAKAAAGSSYRLRYRLHWMKDEPFPSPLA 168
           L++IPT DE +DNIVA W+P      G  + + YRL W KD     PLA
Sbjct: 383 LVQIPTPDETNDNIVAYWIPNTLPKPGQPFNVEYRLSWQKDNEKRPPLA 431


>gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 517

 Score =  179 bits (454), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 1   MDVDCALFLRQDVGRLGIAPATSMMWYSEAVKGTGADWRPEVHDSDGLAIWNGNGEHIWR 60
           +DV   +FLR +VGRLGIAP TSM  +    + +  ++RP +HDS+GLAI  GNGE +WR
Sbjct: 230 LDVQARVFLRGEVGRLGIAPLTSMFLFGPNQQSSRRNFRPAIHDSNGLAIHTGNGEWLWR 289

Query: 61  PLNNPARITASAFGDNNPRGFGLLQRDRNFDHYQD-GVHYERRPSLWVEPLEGWGEGSVQ 119
           PLN+P  +  S+F  +NPRGFGLLQR R F  Y+D    Y+ RPS W+EP   WG+G+VQ
Sbjct: 290 PLNDPQNVEVSSFEVSNPRGFGLLQRGREFSAYEDLKDRYDLRPSAWIEPKGDWGKGAVQ 349

Query: 120 LIEIPTDDEIHDNIVAMWVPKAKAAAGSSYRLRYRLHWMKDEP 162
           L+EIPT DE +DNIVA W+P    A G+     YR+HW  DEP
Sbjct: 350 LVEIPTADETNDNIVAYWLPAQLPARGTPLAYDYRIHWTMDEP 392


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 806,330
Number of extensions: 37712
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 4
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)