BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0021.p
         (426 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter pr...   296   2e-81

>gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  296 bits (758), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/387 (48%), Positives = 240/387 (62%), Gaps = 13/387 (3%)

Query: 11  AYGLLGLPLAMSALPVYIQAPMYYTSYLGATLAGTGWVLFLARIVDTVQDPWLGQYIDGL 70
           AYGLLG PLAM+ALP+++Q P YY S++G  LA  GWVLF AR++D +QDP  G  +D  
Sbjct: 12  AYGLLGAPLAMAALPLFVQIPAYYASHVGLALAPLGWVLFGARLLDMLQDPVFGHLLD-R 70

Query: 71  HGARLNLWMMLAALLLALAFFGIWLPPEFVRASGVYLLAWLGVMLIAAYTAHSMLNIAYL 130
              R   WM +A  +LA+AF  +W PP   +A+    + WL  ML+ AY AHSML+IAYL
Sbjct: 71  SAQRQKRWMAMAGAVLAVAFVCLWKPPHDPQAA----MLWLVAMLVLAYGAHSMLSIAYL 126

Query: 131 AWGARLSEDAGGLLGASALRELMGLLGAVAASVIPGFIMMSGAWGRGGFALYSGAFAAAL 190
           +W +RL E     L A A RE  GL G + ASVIP  I+ + A        +   + A  
Sbjct: 127 SWASRLPEKG---LRAVAWREAAGLAGVIVASVIPAAILAAEASQIDARITF---YCAGF 180

Query: 191 AVSLAALLWLAPRWNKVAAHAGG--WRSAVAAMKSNPGFRRLLLPYFLNAVSVAIPATLA 248
           A  L   L +  R N     A G  W+SA+  +   P FR LL PY LNA+S AI ATLA
Sbjct: 181 AALLGLALLVLLRQNPPPPQADGHHWKSALRGLWETPAFRTLLPPYLLNALSAAIAATLA 240

Query: 249 LFFINDRLQAPDYAGLFLATYFLATAIGLPLWVAAAKRVGVLRAWRVGMLLAILAFGGTV 308
           LFFI D+LQ    AGLFLA YF A A+GLPLW A ++RVG +  WR  MLL++  F G  
Sbjct: 241 LFFIEDQLQQGRLAGLFLAAYFGAAALGLPLWGALSRRVGAVACWRYAMLLSVAGFIGAA 300

Query: 309 LLGAGDVLLYGVVCVAAGLALGADLALPPVLLANVIGRFESTAAYYGVWTLLAKLALAIS 368
           LLG GD L +  VC+A G ALGADL LPPVLLA  + + ++    +G+ T+L KLALA+S
Sbjct: 301 LLGPGDRLAFLAVCLATGAALGADLLLPPVLLARSVRQAQAVGVAFGILTMLGKLALALS 360

Query: 369 GLALPLLARFDYQPGVSGSAALGWVYA 395
           G+ALPLLA  DY+PG   S +L  VYA
Sbjct: 361 GIALPLLAALDYRPGQGPSVSLPLVYA 387


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,327,658
Number of extensions: 55364
Number of successful extensions: 370
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,203,190
Effective search space: 406678220
Effective search space used: 406678220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)