BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0020.p
         (179 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313018|ref|YP_003777110.1| hypothetical protein Hsero_3724...   154   5e-39

>gi|300313018|ref|YP_003777110.1| hypothetical protein Hsero_3724
           [Herbaspirillum seropedicae SmR1]
          Length = 193

 Score =  154 bits (388), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/151 (49%), Positives = 99/151 (65%)

Query: 26  AAGWRDDLSQAHLQGSAGLRWFGLKIYDAALWSGTTPFDPAQPFALELTYRRSISRTRIV 85
           AA WR+ L  A   GS  + W G +IY A LW+   P DP+QPFAL+L Y+  ISR ++ 
Sbjct: 40  AASWREALPAAQPIGSGTMTWLGFRIYQATLWARQRPLDPSQPFALQLDYKVKISRDKLA 99

Query: 86  QTSMDEIRRLFGDRYSEEQLQRWEADMMRAFVDVNEGDQLTGVYLPGVGCRFYSRTRLLA 145
            TS++EI+R+     +   L RW+ +++RAFVDV +GD+L G+YLPG G R Y R + LA
Sbjct: 100 STSVEEIQRMSPTPIAAATLARWKEELVRAFVDVADGDELVGLYLPGRGMRLYDRDKQLA 159

Query: 146 EVRDAEFARAFFAIWLDPRTRDTQLRDRLLG 176
           E+ D E A+AFF IWL   +RD  LR RLLG
Sbjct: 160 EIADPELAKAFFNIWLGQPSRDEGLRRRLLG 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 455,750
Number of extensions: 16904
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 100
Effective length of database: 1,245,805
Effective search space: 124580500
Effective search space used: 124580500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)