BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0017.p
         (431 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310387|ref|YP_003774479.1| dehydrogenase [Herbaspirillum s...   605   e-174

>gi|300310387|ref|YP_003774479.1| dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 428

 Score =  605 bits (1561), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/432 (68%), Positives = 346/432 (80%), Gaps = 9/432 (2%)

Query: 1   MTQARQKIAVIGTGISGLASAYFLAREHDVVLYEAGSYIGGHTNTVDVTLEGRTFPVDTG 60
           M    Q+IAVIG GISGLASAY LAR+H VVLYEA   +GGH NTVD+  EG  F VDTG
Sbjct: 1   MIPTGQRIAVIGAGISGLASAYLLARQHQVVLYEAAPTLGGHANTVDIAPEGVPFAVDTG 60

Query: 61  FLVFNEATYPNLIALLEELGVDSYATDMSFGVSLDDGKFEWAGTSLDTVFAQRRRLMSPA 120
           FLVFN+ TYPNLIAL +EL V++Y TDMSFGVS+D G+FEWAGT+LDTVFAQR+RL+ PA
Sbjct: 61  FLVFNDWTYPNLIALFKELKVETYDTDMSFGVSMDQGQFEWAGTNLDTVFAQRKRLLQPA 120

Query: 121 FVGMLRDILRFNRAAGSNLAASLAAPASAPVTLAQLLADGNYGAMFRDAYLLPMAAAIWS 180
           F+GMLRDILRFNRAA +NLAA        PV+L QLL +G YGA+F DAYL+PMAAAIWS
Sbjct: 121 FLGMLRDILRFNRAAHANLAAC----EGRPVSLRQLLREGGYGALFSDAYLIPMAAAIWS 176

Query: 181 SAPADILQFPAATFLRFCLNHGLLQINDRPQWRTVRGGAREYVRRIAATLPTVRLNTEVL 240
           S+PADIL FPAATFLRFC+NHGLLQ+N+RP+WRTVR G+REYVRRIAATL  VRL + + 
Sbjct: 177 SSPADILDFPAATFLRFCINHGLLQVNNRPRWRTVRNGSREYVRRIAATLDDVRLGSRLE 236

Query: 241 AVLRSDEGVTVRTHGG---YEQFDSVVIATHAPDTLKMLADADAAERDLLSAVRYQANTA 297
           +V+R+++GV VR+ G     EQFD+VV ATHAP TL +L DA   E  +LSAVRYQANTA
Sbjct: 237 SVVRNEQGVLVRSAGPAPREEQFDAVVFATHAPQTLALLQDATIEEHQVLSAVRYQANTA 296

Query: 298 YLHTDLSLMPRRRKVWSSWNYLGDAAAAKDGARAVCVSYWLNRLQALPCKSAVMVTLNPF 357
           +LH+D+SLMP+R KVWS+WNYLG  +   DG+RAVCVSYWLNRLQ LPC+S V++TLNP 
Sbjct: 297 WLHSDISLMPQREKVWSAWNYLG--SRKDDGSRAVCVSYWLNRLQDLPCRSDVVLTLNPP 354

Query: 358 APPAADKTIARFDYQHPVFDQTAISAQAGLTSIQGRRRTWFAGAWTGYGFHEDGLKSALR 417
            PP     + RFDY+HPVFDQ AI AQ  L  +QGR R WFAGAWTGYGFHEDGLKSALR
Sbjct: 355 QPPNPATVMGRFDYEHPVFDQPAIDAQRRLPHLQGRHRAWFAGAWTGYGFHEDGLKSALR 414

Query: 418 VVADFGQAPIWA 429
           V+ DFG  P WA
Sbjct: 415 VIKDFGVLPDWA 426


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,274,986
Number of extensions: 48947
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,203,190
Effective search space: 412694170
Effective search space used: 412694170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)