BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0010.p (404 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine ... 454 e-129 gi|300311886|ref|YP_003775978.1| multi-sensor signal transductio... 107 3e-24 gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine ... 85 8e-18 gi|300312076|ref|YP_003776168.1| signal transduction histidine k... 80 3e-16 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 74 2e-14 >gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 464 Score = 454 bits (1169), Expect = e-129, Method: Compositional matrix adjust. Identities = 240/408 (58%), Positives = 299/408 (73%), Gaps = 10/408 (2%) Query: 1 LRHYVDLAVHSIAHLYERGDAENA-KREALDILARLDYGDDGYFFAYDFAGNTLVHPRQP 59 LRHYVDLA H++AHLY+ G ++A K EA +LA L++GDDGYFF YD G +++HPRQP Sbjct: 53 LRHYVDLAQHALAHLYDTGRTDDAIKEEARHLLADLEFGDDGYFFVYDDTGRSIMHPRQP 112 Query: 60 ELLGRNLWDWENVDGTKTIQRLIVRARGGGGYERYLWRKPSSSTVAPKLAYVIALPKWGW 119 EL+G +W+W + G+ TIQ LI RAR GGGYERYLWRKPSS TVAPKL YVI+LP+WGW Sbjct: 113 ELVGSEMWNWRDASGSFTIQHLIERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGW 172 Query: 120 IIGTGIYLDDVDAALANIDRQISGHNLDTMRLIAVIALLSVAAVAGFGLMFNLSEQRVAD 179 +IGTGIYLDDV+AALA IDRQ SG+ T+ LIA IAL S AV GL+ NLSE RVAD Sbjct: 173 VIGTGIYLDDVEAALAQIDRQNSGYLHQTLLLIASIALASALAVGLAGLLLNLSEHRVAD 232 Query: 180 AKLRELAQRVVLSQEEERARVARDLHDGISQHLVSIKLQTEAAIIKLE-SPQQIAAAGDA 238 AKLR+LAQRVV SQEEERAR++RDLHDGISQ LVSIKLQ EAA+++L +P+Q A A Sbjct: 233 AKLRQLAQRVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATARAG 292 Query: 239 FEHTVEQMNRLLGEIRHISHGLRPALLDDMGLTSALQFLCDEWNANGELRIDFSFSGTSN 298 FE T Q+N +L E+R ISH LRPA+LDD+GL +AL+ LC EW ++ F + Sbjct: 293 FEKTATQINGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQAQ 352 Query: 299 AS-----PDVVNTVMFRVAQEALNNIWRHAKASAVSLELAEKEGMFLLTIRDNGIGFDTG 353 A PDVVNTV+FR+AQEAL NI RHA AS + + L + + +L ++DNG GFD G Sbjct: 353 ADDGATLPDVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFDLG 412 Query: 354 EIAKHPKQGIGLRNMAERLQAVGGSFSVSSSSEGT---VVVAQVPLPA 398 ++ H + GIGLRNM ER++AVGG + SS GT V+A+ LP+ Sbjct: 413 QVDDHSRHGIGLRNMRERIEAVGGELGIDSSPAGTSISAVIARASLPS 460 >gi|300311886|ref|YP_003775978.1| multi-sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 14/242 (5%) Query: 163 VAGFGLMFNLSEQRVADAKL-----RELAQRVVLSQEEERARVARDLHDGISQHLVSIKL 217 VAG + EQ D +L + L+ RV+ QE ER +AR LHD + Q L ++K+ Sbjct: 233 VAGLAIDVTEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKI 292 Query: 218 QTEAAIIKLESPQQIAAAGDAFEHTVEQMNRLLGEIRHISHGLRPALLDDMGLTSALQFL 277 E I K+ S + G + ++ ++ + +L ++R +S LRP LD++GL +AL+ Sbjct: 293 NLET-IKKMGSLE-----GPSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSY 346 Query: 278 CDEWNANGELRIDFSFSGTSNASPDVVNTVMFRVAQEALNNIWRHAKASAVSLELAEKEG 337 ++ + + F SG + FR+ QEA+ NI RHA+ + +++ + Sbjct: 347 VEQKSKLANVNGWFESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHD 406 Query: 338 MFLLTIRDNGIGFDTGEIAKHPKQG--IGLRNMAERLQAVGGSFSVSSSS-EGTVVVAQV 394 L+IRD+G GFD + G GL NM ER VGGS ++S+ GT +V + Sbjct: 407 QVYLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMHL 466 Query: 395 PL 396 P+ Sbjct: 467 PV 468 >gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 677 Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 6/218 (2%) Query: 180 AKLRELAQRVVLSQEEERARVARDLHDGISQHLVSIKLQTEAAIIKLESPQQIAAAGDAF 239 A LREL + +EEE+ +AR+LHD + L ++ + E L ++ A D Sbjct: 456 ALLRELTNHLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQILPPDEKWA---DRK 512 Query: 240 EHTVEQMNRLLGEIRHISHGLRPALLDDMGLTSALQFLCDEWNANGELRIDFSFSGTSNA 299 M L+ R I LRP LD GL +A+ DE + + S Sbjct: 513 VRMQGLMKSLVATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDVE 572 Query: 300 SPDVVNTVMFRVAQEALNNIWRHAKASAVSLELAEKEGMFLLTIRDNGIGFDTGEIAKHP 359 + ++R+ QE LNN+ +HAKAS V + L E LT+RD+G+G H Sbjct: 573 VGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDIDEDHVALTVRDDGVGIPEERRDNH- 631 Query: 360 KQGIGLRNMAERLQAVGGSFSV-SSSSEGTVVVAQVPL 396 + GLR + ER GG + S+ +G ++ +P+ Sbjct: 632 -KTYGLRGLRERATFFGGEVDIRSTPGKGALITISLPI 668 >gi|300312076|ref|YP_003776168.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 356 Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 23/210 (10%) Query: 193 QEEERARVARDLHDGISQHLVSI-----KLQTEAAIIKLESPQQIAAAGDA---FEHTVE 244 +E+ER R+ARDLHD + L + +LQ + A L +P +A A +A + + Sbjct: 151 REQERERIARDLHDDLGGVLAGVGMALGRLQEQLAAQGLAAP--LAEADEARQLLQQAMA 208 Query: 245 QMNRLLGEIRHISHGLRPALLDDMGLTSALQFLCDEWNANGELRIDFSFSGTSNASPDVV 304 M+ ++ E L P +++ GL ALQ+ C + L T + Sbjct: 209 SMHSIIDE-------LHPPIVE-FGLVDALQWQCRQIQREYRLHCQLDCPPTLEQEDRFL 260 Query: 305 NTVMFRVAQEALNNIWRHAKASAVSLELAEKEGMFLLTIRDNGIG---FDTGEIAKHPKQ 361 + R+ +EA +N RH +ASA+ ++L ++ + I D+G G E+A P+ Sbjct: 261 ILGLLRILREAASNAARHGRASALRVDLRMRQARLEMQIADDGCGIAPLHAKEVA--PRH 318 Query: 362 GIGLRNMAERLQAVGGSFSVSSSSEGTVVV 391 G GLRNM ER QA+GG + + +G VV+ Sbjct: 319 GHGLRNMRERAQALGGELFIEAGQDGGVVI 348 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 1/114 (0%) Query: 22 ENAKREALDILARLDYGDDGYFFAYDFAGNTLVHPRQPELLGRNLWDWENVDGTKTIQRL 81 E+A++ A + L YG DGYF ++HP + EL G++L ++++ G + Sbjct: 70 EDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDPAGNNLFVEI 129 Query: 82 I-VRARGGGGYERYLWRKPSSSTVAPKLAYVIALPKWGWIIGTGIYLDDVDAAL 134 ++ GG+ YLW K ++ PK ++VIA W W + TG Y+DD++AA Sbjct: 130 TKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAAF 183 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,119,333 Number of extensions: 42063 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 8 Length of query: 404 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 317 Effective length of database: 1,207,925 Effective search space: 382912225 Effective search space used: 382912225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)