BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0009.p (202 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 251 3e-68 gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 133 1e-32 gi|300310532|ref|YP_003774624.1| virulence regulator protein [He... 124 7e-30 gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula... 112 2e-26 gi|300312077|ref|YP_003776169.1| response regulator containing a... 99 3e-22 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 251 bits (641), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/196 (67%), Positives = 159/196 (81%) Query: 1 MIVDDHPMIRDGLRARLESMPGIRVVAETGTADEAMKHAARQPINLVLMDINLQGSSGIE 60 M++DDHP++RDGLRARLE++PG+ VVAE G ADEA+ AA Q I+L LMDIN++G +GIE Sbjct: 15 MLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGIE 74 Query: 61 LTAQFQQNFPDIAVLILSMHNKAEYVLQSIRAGARGYILKDAPGSDIVRAIEAVLNGGVY 120 LTA F P+IAVLILSMH+KAEYV+QSI+AGARGY+LKDAP DIV AIE V +GG+Y Sbjct: 75 LTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGIY 134 Query: 121 YSAALMPIIAQPRVKEESLTVRERQVLEQIARGASNKSIAETLDLSVRTVETHCLNIKRK 180 YSAAL + QP E LT RER+VL IA G SNK IA LDLSVRTVETH LNIKRK Sbjct: 135 YSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNIKRK 194 Query: 181 LDIEGRSELIKFALEN 196 L+I+G++ELIKFA+E+ Sbjct: 195 LNIDGQAELIKFAVES 210 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 133 bits (334), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 120/202 (59%), Gaps = 8/202 (3%) Query: 1 MIVDDHPMIRDGLRARLESMPGIRVVAETGTADEAMKHAARQPINLVLMDINLQGSSGIE 60 M+ DDH ++R G++A L +MPG+ VV E E ++ + +LVL+DI ++G +G+E Sbjct: 6 MLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNGLE 65 Query: 61 LTAQFQQNFPDIAVLILSMHNKAEYVLQSIRAGARGYILKDAPGSDIVRAIEAVLNGGVY 120 + + +P I L+LSM+ EYV+Q++ AGA GY+ KD+ +++ +A+ V +G Y Sbjct: 66 ALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGRQY 125 Query: 121 YSAAL--------MPIIAQPRVKEESLTVRERQVLEQIARGASNKSIAETLDLSVRTVET 172 + + M +AQ E LT R+R++L+ IA G + K IA L++S +T+ET Sbjct: 126 LDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTIET 185 Query: 173 HCLNIKRKLDIEGRSELIKFAL 194 H + +LDI L+++A+ Sbjct: 186 HRAQLMERLDIRDVPGLVRYAI 207 >gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 124 bits (310), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 120/201 (59%), Gaps = 5/201 (2%) Query: 1 MIVDDHPMIRDGLRARLESMPGIRVVAETGTADEAMKHAARQPINLVLMDINLQGSSGIE 60 ++VDDH ++R G+ + +P + + E TA+EA++ Q ++VL+DI + SG+E Sbjct: 5 LVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVE 64 Query: 61 LTAQFQQNFPDIAVLILSMHNKAEYVLQSIRAGARGYILKDAPGSDIVRAIEAVLNGGVY 120 + Q ++ P++ VL+LSMH ++ Y +Q +R+GA GY+ K+A +++V AI +L G Y Sbjct: 65 VLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKY 124 Query: 121 YSAALMPIIAQPRVK-----EESLTVRERQVLEQIARGASNKSIAETLDLSVRTVETHCL 175 S + ++ V E+L+ RE ++ ++ +G IA+ L LSV+TV T+ Sbjct: 125 ISYGVAELLTSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRS 184 Query: 176 NIKRKLDIEGRSELIKFALEN 196 + +K+ + +++I +A++N Sbjct: 185 RVLQKMSMTNNADIIYYAIKN 205 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 12/208 (5%) Query: 1 MIVDDHPMIRDGLRARLESMPGIRVVAETGTADEAMKHAARQPINLVLMDINLQGSSGIE 60 ++VDDH + R G+R L+ P I VV E + +K A + ++VLMD+N+ G SG+E Sbjct: 6 LLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGLSGLE 65 Query: 61 LTAQFQQNFPDIAVLILSMHNKAEYVLQSIRAGARGYILKDAPGSDIVRAIEAVLNGGVY 120 Q+ P+ AVL+LS+ +A+ + ++ GARGY+LK+ +V++I+ G Sbjct: 66 AMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAAAGEPV 125 Query: 121 YSAALMP-IIAQPRV-----------KEESLTVRERQVLEQIARGASNKSIAETLDLSVR 168 S ++ ++ Q R + LT RER + IARG SNK IA +L+++ Sbjct: 126 ISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEVAES 185 Query: 169 TVETHCLNIKRKLDIEGRSELIKFALEN 196 TV+ H N+ RKL + R ++ +A+E+ Sbjct: 186 TVKIHVQNLLRKLQLSSRVQIAVYAVEH 213 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 99.0 bits (245), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 14/210 (6%) Query: 1 MIVDDHPMIRDGLRARLESMPGIRVVAETGTADEAMKHAARQPINLVLMDINLQGSSGIE 60 +I DDH ++R+GLR I V EA+K A +++L+DI L +GI+ Sbjct: 12 LIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRNGID 71 Query: 61 LTAQFQQNFPDIAVLILSMHNKAEYVLQSIRAGARGYILKDAPGSDIVRAIEAVLNGGVY 120 + Q ++ P++ VLILS+H + +Y +++++AGA G++ K A ++++ AI +G Y Sbjct: 72 ILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASGRKY 131 Query: 121 YSAALMPIIAQPRVKE----------ESLTVRERQVLEQIARGASNKSIAETLDLSVRTV 170 S P +AQ + E+L+ RE Q + IA G + IA L LSV+T+ Sbjct: 132 VS----PSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKTI 187 Query: 171 ETHCLNIKRKLDIEGRSELIKFALENLRTE 200 + + K+ + +EL +AL+N E Sbjct: 188 SMYRSRVLSKMKMRHNAELTHYALKNALVE 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 543,718 Number of extensions: 20053 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 11 Length of query: 202 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 121 Effective length of database: 1,236,335 Effective search space: 149596535 Effective search space used: 149596535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)