BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0006.p
         (423 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313249|ref|YP_003777341.1| major facilitator superfamily p...   565   e-162
gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance...    55   7e-09

>gi|300313249|ref|YP_003777341.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 398

 Score =  565 bits (1456), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 295/383 (77%), Positives = 336/383 (87%)

Query: 28  MSGAEVRASASLASIFALRMLGLFLILPVFAVHAKGLSGGESAAMVGLAMGIYGLAQSFG 87
           MS AEVRASASLASIF+LRMLGLFL+LPVFAVHA  L GG++  +VG+A+GIYGLAQ+FG
Sbjct: 1   MSRAEVRASASLASIFSLRMLGLFLVLPVFAVHAHSLPGGDNDTLVGIALGIYGLAQAFG 60

Query: 88  QIPFGIASDKYGRKRVIVVGLVLFALGSFVAAGAQDIGWVIAGRAIQGAGAISAAVTAFI 147
           QIP+GIASD+YGRKR+IV+GL+LFALGSFVAA A  + W++ GRA+QG+GAISAA+TAFI
Sbjct: 61  QIPYGIASDRYGRKRIIVIGLLLFALGSFVAAAATSVIWLLVGRALQGSGAISAAITAFI 120

Query: 148 ADSTREEHRTKAMAMVGASIGLTFAVSLVASPLLYKAIGMGGIFGLTGVLALAAIGVVLF 207
           ADSTREEHRTKAMAMVGASIG+TFAVS+VASPLLYK+IGMGGIFGLTGVL+L AI VV++
Sbjct: 121 ADSTREEHRTKAMAMVGASIGVTFAVSMVASPLLYKSIGMGGIFGLTGVLSLIAIAVVVW 180

Query: 208 VVPDAPMVKARRVPWGEVLRHGELMRLNFGVFALHMTQMAMFVVLPAALVQYAGLPVAEH 267
           VVP AP+V+ARRVP  EVLRHGELMRLNFGVF LH+TQ+AMF+V+P ALVQ AGLP+ EH
Sbjct: 181 VVPAAPLVQARRVPLREVLRHGELMRLNFGVFTLHLTQVAMFMVVPGALVQLAGLPLGEH 240

Query: 268 WKIYLPVVLASFVFMLPPVFIGEKRGLMKQVFVAAISLLLLVQIGMWLTLSHFAAHWGVL 327
           WKIYLPVVLASFV MLPPVF+ EK G MKQVF+ AI L+LLVQ+G W  LSH   HW +L
Sbjct: 241 WKIYLPVVLASFVLMLPPVFVAEKYGRMKQVFLGAIGLMLLVQLGFWAVLSHPLGHWWML 300

Query: 328 VFLLFAFFIAFNILEACQPSLVSRIAPAAAKGTALGVYNTLQALGLFCGGALGGWLKQFA 387
           V LLF FF+AFNILEA QPSLVSRIAP AAKG ALGVYNTLQALGL CGGALGGW+KQ  
Sbjct: 301 VALLFLFFVAFNILEASQPSLVSRIAPPAAKGAALGVYNTLQALGLSCGGALGGWIKQNV 360

Query: 388 GAPSVFVMCAVATLTWLIIASNM 410
           G   VF + AV TLTWLIIA+NM
Sbjct: 361 GISEVFALSAVVTLTWLIIAANM 383


>gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance
           transporter protein [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 80  YGLAQSFGQIPFGIASDKYGRKRVIVVGLVLFALGSFVAAGAQDIGWVIAGRAIQGAG-- 137
           Y +A +FGQ+ FG  +D YGRKR++ +GL LF+LG  ++  A ++   +A R +QG G  
Sbjct: 65  YLIAYAFGQLVFGPLADAYGRKRILALGLGLFSLGCVLSLAAPNLETFVAARVLQGFGIA 124

Query: 138 AISAAVTAFIADSTREEHRTKAMAMVGASIGLTFAVSLVASPLLYKAIG 186
           A +    A I DS   +    A   +  + GL   ++ V    L +A G
Sbjct: 125 ATNLLAKAIITDSFAGQALVHAYTYMAIAWGLAPIIAPVIGAHLQEAFG 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,151,272
Number of extensions: 46677
Number of successful extensions: 375
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 6
Length of query: 423
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,203,190
Effective search space: 403068650
Effective search space used: 403068650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)