BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0004.p
         (483 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose tra...   586   e-168

>gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose
           transferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 584

 Score =  586 bits (1510), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 294/454 (64%), Positives = 359/454 (79%)

Query: 1   VARIARVAWSEEDFLNSRVLGTLALFAGTVGMIKHAHDMFTDVALVCGGTIAMYGLLRIA 60
           VARIA++ W+E   L+  VLGT+ALFAG+ GMIKHAHDMFTDVALV GG +A+YGLL IA
Sbjct: 129 VARIAQLMWNERRVLSLPVLGTVALFAGSPGMIKHAHDMFTDVALVTGGAMAIYGLLAIA 188

Query: 61  LNEQRKTPRISAALWFGLGVGIAEMSKGLFVPVIYAATALLTGLLVRECRSRSYLRMVGV 120
           LNE+R+ P  SAA WFGLGVGI +M+KGLFVP+ +AATA+  G+LVR CRS SY +MVG 
Sbjct: 189 LNEERRAPSWSAAFWFGLGVGITQMTKGLFVPLTFAATAMAVGVLVRPCRSLSYWKMVGA 248

Query: 121 AVLVSLPFFLLWPILLAQHSMPLFMEWFWDNNVGRFLGFSVRKLGSDNDHSVIFRALSGF 180
           AVLVSLPFF++WP LLAQHS+PLFMEWFWDNNVGRF GFSV KLGSDNDH+VI RAL GF
Sbjct: 249 AVLVSLPFFVVWPALLAQHSVPLFMEWFWDNNVGRFFGFSVYKLGSDNDHTVILRALIGF 308

Query: 181 ALPGAPLAVLAIAGGDWRRIRQPRVAIPLAFTFVCITLLLMSATARQLYLLPLILPLCLL 240
           ALPG+ LAVLA+A GDWR+   PRVA+PLAF  + + +L  SATARQLYLLP++LPL LL
Sbjct: 309 ALPGSVLAVLALATGDWRQTGSPRVALPLAFAAISLAVLQSSATARQLYLLPVLLPLALL 368

Query: 241 GSTAIDRLHDWVHLSWDWFARLFFGGMTALVWTIYIISIGPVEYHHYLFCLAKWLPLGFI 300
           G+ AI RL +  HL WDWF+R+ FG + A +W IY++S  P   HH++  + +WLPL F+
Sbjct: 369 GARAIARLPNAFHLGWDWFSRIAFGVLAAAIWAIYVVSSLPAADHHWIDFMGQWLPLNFV 428

Query: 301 TPLQPLALGAAILMTLGWLCCLPRLKQCGKWRGALSWFAGLTLMWGAAYTLLLPWGDFAK 360
           TPLQPLAL AA+ M++ WL  L +L+  G+WRGALSWFAG+TLMWG A+TLLLPW D+ K
Sbjct: 429 TPLQPLALAAAVGMSVLWLWGLGQLRLAGQWRGALSWFAGITLMWGLAFTLLLPWADYGK 488

Query: 361 SFEYVYARLSDRLKPEWRDGDCMASIGLGESEAPMLLYYAGILHQPVDKTLATSCRWVIV 420
           S+E+VY  L  ++  +W+DGDCMAS  LGESEAPML YY GILHQP+D    T CRWV++
Sbjct: 489 SYEFVYTDLKQQIAAQWQDGDCMASENLGESEAPMLYYYTGILHQPIDGVYQTQCRWVLL 548

Query: 421 QTPFGTGLPAGKWEHFWKGSRDGDDEQTFNVYRR 454
           +TP  T LP G+W+ FW+G RDGDD Q   VYRR
Sbjct: 549 ETPGNTPLPQGQWKLFWEGRRDGDDGQLLKVYRR 582


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,647,914
Number of extensions: 72975
Number of successful extensions: 267
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 3
Length of query: 483
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,198,455
Effective search space: 472191270
Effective search space used: 472191270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)