BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0024.p
         (145 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313176|ref|YP_003777268.1| universal stress protein [Herba...   244   2e-66
gi|300311715|ref|YP_003775807.1| universal stress protein [Herba...   119   7e-29
gi|300311605|ref|YP_003775697.1| universal stress protein [Herba...   105   1e-24

>gi|300313176|ref|YP_003777268.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  244 bits (623), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 130/145 (89%)

Query: 1   MFKTILVPTDGSERSDKAIANAIDYAQHCKSRIIGISVAEPYPFSPLAESSMAIDPGIYE 60
           MFKTILVPTDGSERSDKAIA A+DYA++  +R+IGI+VAEPYPFSPLAESSMAIDP +YE
Sbjct: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60

Query: 61  ENVRTLAEQHVKKIADAALAAGVECETTTVLSFAPDEEIVNAAKKYACDVIFMASHGRSG 120
           ENV+TLA+QH+KKI DAA AAGV C+T  V+SF PDEEI+ AA+ +ACD IFMASHGRSG
Sbjct: 61  ENVKTLAQQHIKKITDAATAAGVPCQTEIVMSFNPDEEIIKAAQLHACDAIFMASHGRSG 120

Query: 121 LSRLFLGSKTQKVLAHSAIPVLVLR 145
           LSR+FLGSKTQKVL HS IPVLVLR
Sbjct: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145


>gi|300311715|ref|YP_003775807.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  119 bits (299), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 93/145 (64%), Gaps = 1/145 (0%)

Query: 1   MFKTILVPTDGSERSDKAIANAIDYAQHCKSRIIGISVAEPYPFSPLAESSMAIDPGIYE 60
           +FK ILVPTDGS+ S++A+  A+ +A+   S ++G+SVAE      + + + AI+    E
Sbjct: 14  IFKKILVPTDGSDASERAVQAAVQFAKESGSSLVGLSVAEDIVQWAVIDGT-AINYLQVE 72

Query: 61  ENVRTLAEQHVKKIADAALAAGVECETTTVLSFAPDEEIVNAAKKYACDVIFMASHGRSG 120
             +   A+ +V ++A  A +A V CET TV +  P EEI+  A    CD IFMASHGR G
Sbjct: 73  NEILENAKSNVARLAALAKSADVPCETFTVKAVHPYEEILAHASHQHCDAIFMASHGRKG 132

Query: 121 LSRLFLGSKTQKVLAHSAIPVLVLR 145
           L R  LGS+TQKVLA++ IPVLV R
Sbjct: 133 LERFILGSQTQKVLANATIPVLVFR 157


>gi|300311605|ref|YP_003775697.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  105 bits (263), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 81/145 (55%)

Query: 1   MFKTILVPTDGSERSDKAIANAIDYAQHCKSRIIGISVAEPYPFSPLAESSMAIDPGIYE 60
           MFK IL+ TDGS   ++++  AI  A+ C S ++G+SV+       + E S+ +D     
Sbjct: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAG 60

Query: 61  ENVRTLAEQHVKKIADAALAAGVECETTTVLSFAPDEEIVNAAKKYACDVIFMASHGRSG 120
           E  R  A   V+ I + A   GV C         P EEI+  A++  CD IFMAS  RS 
Sbjct: 61  EAGRARALASVEMITEMARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKARST 120

Query: 121 LSRLFLGSKTQKVLAHSAIPVLVLR 145
           L RL +GS+TQK+LA S +PVLV R
Sbjct: 121 LGRLLMGSQTQKLLARSKVPVLVFR 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 417,360
Number of extensions: 14510
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 3
Length of query: 145
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,255,275
Effective search space: 85358700
Effective search space used: 85358700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)