BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0023.p
         (400 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313177|ref|YP_003777269.1| membrane-bound lytic murein tra...   580   e-167

>gi|300313177|ref|YP_003777269.1| membrane-bound lytic murein
           transglycosylase [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  580 bits (1496), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/395 (71%), Positives = 330/395 (83%), Gaps = 8/395 (2%)

Query: 6   TSIRR-SLPALAVIVAVSLAACTTTPLPPATPTPPVTPAKPSVPAQPEGQAQEMQKSSFA 64
           +S+RR S+PA+A+ VAV LAAC TTP+     TP V+   P   AQP      M+ +SF+
Sbjct: 15  SSLRRLSVPAMAISVAVLLAACQTTPVT----TPGVSQPSPRPTAQP---GPAMRATSFS 67

Query: 65  AMPGWDRDALREAWPAFLISCQTLVRRSEWKNACTTARQVNANDEGAIRAFFESGFTPYK 124
            +PGW+ D LREAWPA   SC  ++R+ EW+ AC  A+QVN +D G +R +FE+ FTPY+
Sbjct: 68  QLPGWNNDDLREAWPAVQSSCSVMIRKPEWRAACAAAQQVNGSDLGLLRQYFETYFTPYQ 127

Query: 125 VFNPDGSDTGLVTGYYEPLLRGSRKRGGPYQTPLYRAPDDLLTIDLASLYPELKNMRLRG 184
           ++N DG+DTGLVTGYYEPLLRGSR+R GPYQTPLY+APDDLLTID+AS+YPELKN+RLRG
Sbjct: 128 LYNQDGTDTGLVTGYYEPLLRGSRRRSGPYQTPLYQAPDDLLTIDMASVYPELKNLRLRG 187

Query: 185 RVVGNKVVPYSSRAELLQSGALAGKELVWVDDPVEAFFLQVQGSGRVQLADTQETVRLAY 244
           +VVG KVVPY +RAEL+Q  ALAGKE+VWVDDPVEAFFLQVQGSGRV L +++ET+RLAY
Sbjct: 188 KVVGRKVVPYPTRAELMQGNALAGKEIVWVDDPVEAFFLQVQGSGRVYLPESRETIRLAY 247

Query: 245 ADQNGYPYKSIGRYLVDKGEMTLSQASAQGIKAWVIANPSRQNELLNVNPSYIFFKEEKI 304
           ADQNG PYKSIGRYLVDKGEM LSQASAQ IKAWV ANP+R+ ELLN NPSY+FFKEEK+
Sbjct: 248 ADQNGRPYKSIGRYLVDKGEMELSQASAQNIKAWVQANPARKEELLNANPSYVFFKEEKL 307

Query: 305 ADPSKGPKGAMGLPLTGQRSIAVDPQHIPLGTPVFLATTQPNSDTVLQRLVLAQDTGGAI 364
            DPSKGPKGA G+PLT QRSIA+DPQH+PLG PVFLATT PNSD  LQRLV+AQDTGGAI
Sbjct: 308 PDPSKGPKGAQGIPLTPQRSIAIDPQHVPLGAPVFLATTLPNSDRPLQRLVVAQDTGGAI 367

Query: 365 RGAVRADYFWGFGNEAGEKAGGMKQRGMMWVLLPN 399
           RG VRADYFWGFG+EA ++AG MKQRGMMWVLLP 
Sbjct: 368 RGVVRADYFWGFGDEAEDRAGSMKQRGMMWVLLPK 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,224,073
Number of extensions: 53433
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,207,925
Effective search space: 378080525
Effective search space used: 378080525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)