BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0021.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313179|ref|YP_003777271.1| ribulose-5-phosphate 3-epimeras...   345   2e-96

>gi|300313179|ref|YP_003777271.1| ribulose-5-phosphate 3-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  345 bits (884), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/186 (93%), Positives = 182/186 (97%)

Query: 8   LDVMDNHYVPNLTIGPLVCEAIRPHVQVPIDVHLMVKPVDRIIPDFAKAGANIITFHPEG 67
            DVMDNHYVPNLTIGPLVCEAIRPHVQVPIDVHLMVKPVDRIIPDFAKAGAN+ITFHPE 
Sbjct: 35  FDVMDNHYVPNLTIGPLVCEAIRPHVQVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEA 94

Query: 68  SEHIDRSLQLIRDNGCKAGLVFNPGTPLHFLDHVMDKIDIVLIMSVNPGFGGQSFIPEAL 127
           SEHIDRSLQLIRDNGCKAGLVFNPGTPLH+LDHVMDK+D+VLIMSVNPGFGGQSFIPEAL
Sbjct: 95  SEHIDRSLQLIRDNGCKAGLVFNPGTPLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEAL 154

Query: 128 KKIAAVRRRIDESGRDIMLEVDGGIKIDNIAAAAKAGADTFVAGSAIFGKPDYKAVIDAM 187
           KKIA VRRRIDESGRDI+LEVDGGIKI+NIAAAA+AGADTFVAGSAIFGKPDYKAVIDAM
Sbjct: 155 KKIAEVRRRIDESGRDILLEVDGGIKIENIAAAARAGADTFVAGSAIFGKPDYKAVIDAM 214

Query: 188 RGELAK 193
           R ELA+
Sbjct: 215 RAELAQ 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.142    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 572,717
Number of extensions: 22123
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)