BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0020.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...   363   e-102
gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase [H...    82   4e-17
gi|300311212|ref|YP_003775304.1| phosphoglycolate phosphatase [H...    57   2e-09

>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score =  363 bits (932), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/225 (78%), Positives = 197/225 (87%), Gaps = 4/225 (1%)

Query: 2   LDNIKAAIIDLDGTMLDTAPDFHVAVNRMRADLGLGPLAMQTIVNFVGKGSENLMRRVLA 61
           L NIKAAIIDLDGTMLDTA DFHVAVNRMR DLGL PL+ +TIVNFVGKG+ENL+RRVLA
Sbjct: 4   LTNIKAAIIDLDGTMLDTAADFHVAVNRMRDDLGLTPLSQETIVNFVGKGTENLIRRVLA 63

Query: 62  VDYDEDGVEQRFEEALASYQEHYLAINGDYATLYPNVIEGLQALKAKGLRLACVTNKPIA 121
           VDY ED   Q F++ALA+  EHYLAINGDY++LYP V+EGLQAL+ KGLRLACVTNKP+A
Sbjct: 64  VDYAEDEAAQYFQQALAACTEHYLAINGDYSSLYPGVLEGLQALRNKGLRLACVTNKPLA 123

Query: 122 FALPLMDKKGLYPFFDVIYGGDSLPKKKPDPMPLLQVCAXVGADFSLQPVQVVAIGDSSN 181
           FA+PL+ KKGL  FF+++YGGDS PKKKPDPMPLLQVC     DF+L P QVVAIGDSSN
Sbjct: 124 FAVPLLQKKGLRDFFEIVYGGDSFPKKKPDPMPLLQVC----QDFALAPAQVVAIGDSSN 179

Query: 182 DAQAARAAGCRVLNVPYGYNHGEPIHNVDSDGIVPTLLDAAHQIS 226
           DAQAARAAGCRVLNVPYGYNHGE IH+VDSDGIV TL++AA QIS
Sbjct: 180 DAQAARAAGCRVLNVPYGYNHGESIHDVDSDGIVSTLVEAAQQIS 224


>gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score = 81.6 bits (200), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 90/201 (44%), Gaps = 10/201 (4%)

Query: 6   KAAIIDLDGTMLDTAPDFHVAVNRMRADLGLGPLAMQTIVNFVGKGSENLMRRVLAVDYD 65
           +A + DLDGT+ DTAPD   A N +R   GL     + +      G+  L+   L +   
Sbjct: 7   RAILFDLDGTLADTAPDLAAAANFLRQQRGLEDAPYEQLRPVASAGARGLIGAALGIRPG 66

Query: 66  EDGVEQRFEEALASYQEHYLAINGDYATLYPNVIEGLQALKAKGLRLACVTNKPIAFALP 125
           ED     +EE    + + Y A    ++ L+  + E L  L+A+G+    VTNK   F   
Sbjct: 67  ED----EYEELRVRFLDRYQANMTTHSRLFDGIPELLVQLEARGIAWGIVTNKAARFTDV 122

Query: 126 LMDKKGLYPFFDVIYGGDSLPKKKPDPMPLLQVCAXVGADFSLQPVQVVAIGDSSNDAQA 185
           L  + GL      I  GD+ P  KP P PLL+    +     L P     +GD   D QA
Sbjct: 123 LAPQIGLG-HAGCIVSGDTTPHSKPHPAPLLEAARRL----QLTPEDCWYVGDDLRDIQA 177

Query: 186 ARAAGCRVLNVPYGY-NHGEP 205
            +AA    +   +GY  H EP
Sbjct: 178 GKAAAMPTIAAAWGYCGHTEP 198


>gi|300311212|ref|YP_003775304.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 13/192 (6%)

Query: 9   IIDLDGTMLDTAPDFHVAVNRMRADLGLGPLAMQTIVNFV-GKGSENLMRRVLAVDYDED 67
           + D DGT++D+       +     DLGL P+  ++  ++V G G ++ M+  +      D
Sbjct: 10  VFDWDGTLMDSTSTIVRCIQAAARDLGL-PIPDKSAASYVIGLGLQDAMQAAIP-----D 63

Query: 68  GVEQRFEEALASYQEHYLAINGDYATLYPNVIEGLQALKAKGLRLACVTNKPIAFALPLM 127
              + +   +  Y+ HYL  + D  TL+  V E L  L  +G  LA  T K        M
Sbjct: 64  VDPKYYPRIVERYRHHYLGQDKDL-TLFEGVPEMLADLSQQGYFLAVATGKSRVGLNRAM 122

Query: 128 DKKGLYPFFDVIYGGDSLPKKKPDPMPLLQVCAXVGADFSLQPVQVVAIGDSSNDAQAAR 187
           +  GL   FD     D     KP P  L ++   +G D      + + IGD+++D Q A 
Sbjct: 123 NTTGLLSMFDASRCADE-TFSKPHPAMLQELTRELGQDMH----RTLMIGDTTHDLQMAI 177

Query: 188 AAGCRVLNVPYG 199
            AG   + V +G
Sbjct: 178 NAGAAGVAVEFG 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 678,014
Number of extensions: 26162
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 3
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)