BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0015.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313185|ref|YP_003777277.1| indole-3-glycerol phosphate syn...   385   e-108

>gi|300313185|ref|YP_003777277.1| indole-3-glycerol phosphate
           synthase 1 protein [Herbaspirillum seropedicae SmR1]
          Length = 266

 Score =  385 bits (990), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/224 (87%), Positives = 209/224 (93%)

Query: 2   QGFETGLRDKIAAGHAGIIAEVKKASPSKGVIRPDFKPAEIAASYAAHGAACLSVLTDVQ 61
           + FE  LR KIA G AG+IAEVKKASPSKGVIRPDFKPAEIA SYA HGAACLSVLTD Q
Sbjct: 43  RNFEESLRGKIANGQAGVIAEVKKASPSKGVIRPDFKPAEIAVSYAEHGAACLSVLTDEQ 102

Query: 62  FFQGAPEYLRQARAACALPVLRKDFMMDLYQVYEARSWGADAILLIVAALDHGLMAELEA 121
           FFQG+P+YL+QARAACALPVLRKDFMMD YQ+Y+ARSWGADAILLIVAALDHGLMA+LEA
Sbjct: 103 FFQGSPDYLKQARAACALPVLRKDFMMDHYQIYQARSWGADAILLIVAALDHGLMADLEA 162

Query: 122 CAHELGMSVLVEVHDGVELDAALKLKTALLGINNRNLRTFETTLDTTLSLLPRIPSDKLV 181
           CAHELGMSVLVEVHD  ELDAALKLKT LLGINNRNLRTFETTLDTTL+LLPRIP +KLV
Sbjct: 163 CAHELGMSVLVEVHDQAELDAALKLKTRLLGINNRNLRTFETTLDTTLNLLPRIPPEKLV 222

Query: 182 ITESAIATPDDVKRMRDAKVNAFLVGEAFMRAPEPGVELARLFA 225
           +TESAIATPDDVKRMRDA V+AFLVGEAFMRAPEPGVELARLFA
Sbjct: 223 VTESAIATPDDVKRMRDADVHAFLVGEAFMRAPEPGVELARLFA 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 616,254
Number of extensions: 22236
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)