BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0010.p
         (526 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313189|ref|YP_003777281.1| ubiquinone biosynthesis transme...   918   0.0  

>gi|300313189|ref|YP_003777281.1| ubiquinone biosynthesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 524

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/526 (87%), Positives = 489/526 (92%), Gaps = 3/526 (0%)

Query: 1   MFLRSLRLFKIVRVAIRYGLDEIAISGFDTPRITRLLNGPPPXSFWRDLSTPRGERLRRA 60
           M LRS+RL KIVRVAI YGLDEI  S F  PRI R++N      FWRDLS PRGERLRRA
Sbjct: 1   MLLRSMRLLKIVRVAILYGLDEIIASEFAPPRIARIINR---IFFWRDLSAPRGERLRRA 57

Query: 61  LEDLGPIFVKFGQVLSTRRDLLPLDIADELTRLQDRVPPFDSELAIAQIEKSLGAHPDVL 120
           LEDLGPIF+KFGQVLSTRRDL+P DIA+ELT LQDRVPPFDSELA+ QIEKSLGAHPD+L
Sbjct: 58  LEDLGPIFIKFGQVLSTRRDLMPPDIANELTLLQDRVPPFDSELAVKQIEKSLGAHPDLL 117

Query: 121 FASFDRTPIASASIAQVHFATLKDGTEVAVKVLRPGMRSTIDHDIGLMHIAADWVERLWA 180
           FA+F+RTP+ASASIAQVHFATLKDG EVAVKVLRPGMR  IDHDIGLMH+AADW+ERLWA
Sbjct: 118 FATFERTPVASASIAQVHFATLKDGKEVAVKVLRPGMRDIIDHDIGLMHVAADWLERLWA 177

Query: 181 DGRRLKAKEVVGEFDKYLHDELDLMREAANASQLRRNFANSDLLMVPEMYWDYCSSSVIV 240
           DGRRLKAKEVVGEFDKYLHDELDLMREAANASQLRRNFA S LLMVPEMYWDYCS SVIV
Sbjct: 178 DGRRLKAKEVVGEFDKYLHDELDLMREAANASQLRRNFAESTLLMVPEMYWDYCSPSVIV 237

Query: 241 MERMHGIPIGQTERLQAEGVDLSKLSRDGVEIFFTQVFRDGFFHADMHPGNILVSTAPAT 300
           MERMHGIPI QTERL+AEGVDLSKLSRDGVEIFFTQVFRDGFFHADMHPGNILVS AP +
Sbjct: 238 MERMHGIPISQTERLRAEGVDLSKLSRDGVEIFFTQVFRDGFFHADMHPGNILVSVAPES 297

Query: 301 FGRYIALDFGIVGTLTDFDKDYLSQNFLAFFQRDYKRVAEAHIESGWAPKDTRVDELEAA 360
           FGRYIALDFGIVGTL DFDKDYLSQNFLAFF+RDYKRVAEAHIESGWAPKDTRVDELEAA
Sbjct: 298 FGRYIALDFGIVGTLNDFDKDYLSQNFLAFFRRDYKRVAEAHIESGWAPKDTRVDELEAA 357

Query: 361 VRACCEPIFDRPLKDISFGQVLLRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPE 420
           VRACCEPIFDRPLKDISFGQVLLRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDP+
Sbjct: 358 VRACCEPIFDRPLKDISFGQVLLRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPD 417

Query: 421 LDLWKTAKPYLERWMNEQIGWRGFVQQLKIEVPRYSRLLPQLPRLAHQALTMATEGGRNE 480
           LDLWKTAKPYLERWM+EQIGWRGFV+QLK+EVPRYSRLLP+LPRLAHQALT  TEG    
Sbjct: 418 LDLWKTAKPYLERWMSEQIGWRGFVEQLKVEVPRYSRLLPELPRLAHQALTRYTEGDSQP 477

Query: 481 QNADLLRKLVAEQRRTNLLLGVIVYFGGGLIGGIIVVQVLLHFLRY 526
           QN +L+RKL+AEQRRTN+ LGVIVYFGGGLIGG+IV+Q+L+HFL++
Sbjct: 478 QNTELIRKLLAEQRRTNMFLGVIVYFGGGLIGGVIVIQLLMHFLKF 523


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,578,705
Number of extensions: 67185
Number of successful extensions: 252
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 436
Effective length of database: 1,193,720
Effective search space: 520461920
Effective search space used: 520461920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)