BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0008.p
         (79 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspi...   134   1e-33
gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspi...   117   2e-28

>gi|300313191|ref|YP_003777283.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  134 bits (337), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 70/79 (88%)

Query: 1   LRLQLQERGNAANNTDVVQIDGELLGIETLEHDYLATIKFTGLIKEAPDASAEPFAEIWN 60
           LR+QL ERG A N TDVVQ+D +LLGIET+  DYLAT++F GLIKEAPD SAEPFAEIWN
Sbjct: 239 LRMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEIWN 298

Query: 61  LSKPVNGTGGWVLAGIQQV 79
           LSKP+NG+GGWVLAGIQQV
Sbjct: 299 LSKPLNGSGGWVLAGIQQV 317


>gi|300309983|ref|YP_003774075.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  117 bits (293), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 64/79 (81%)

Query: 1   LRLQLQERGNAANNTDVVQIDGELLGIETLEHDYLATIKFTGLIKEAPDASAEPFAEIWN 60
           LRLQ+QERG A+N TDVV +D E+LG+ET+ +DYLA++KF G IKE P AS   FAEIWN
Sbjct: 159 LRLQIQERGAASNQTDVVSLDAEVLGVETVGNDYLASVKFFGFIKEDPTASPAQFAEIWN 218

Query: 61  LSKPVNGTGGWVLAGIQQV 79
           LSKP  G GGWVLAGIQQ+
Sbjct: 219 LSKPAAGQGGWVLAGIQQI 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 281,744
Number of extensions: 9889
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 2
Length of query: 79
Length of database: 1,619,870
Length adjustment: 50
Effective length of query: 29
Effective length of database: 1,383,120
Effective search space: 40110480
Effective search space used: 40110480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)