BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0007.p
         (131 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspi...    65   2e-12
gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspi...    57   5e-10

>gi|300313191|ref|YP_003777283.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 64.7 bits (156), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 63/100 (63%), Gaps = 4/100 (4%)

Query: 3   PKPASPWKGILGGALLGLGLGALLSHFGLGGAMASMLSTILMVALLAFVAMFLFRMFTRK 62
           PKPASPW+ +LGGALLG GLGAL+SHFG+GGAM  +L ++L +ALL    +FL RMF R 
Sbjct: 74  PKPASPWRNVLGGALLGFGLGALMSHFGIGGAMGGLLGSLLTIALLCAAVIFLIRMFAR- 132

Query: 63  NGGNSGAAGNNGF-TPQPAYASAPELAVHTPEIGSRIEPV 101
             G      N  + TP P  +     A  TPEIGS +  +
Sbjct: 133 --GREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDI 170


>gi|300309983|ref|YP_003774075.1| transmembrane protein
          [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 57.0 bits (136), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 62/91 (68%), Gaps = 5/91 (5%)

Query: 9  WKGILGGALLGLGLGALLSHFGLGGAMASMLSTILMVALLAFVAMFLFRMFTRKNGGNSG 68
          WKG+LGGALLGLGLGALLSHFGLGGA+ASM+STIL VAL+A   MF+ RMF RK+     
Sbjct: 2  WKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAIMFVVRMFRRKS----- 56

Query: 69 AAGNNGFTPQPAYASAPELAVHTPEIGSRIE 99
           A         A   A + A  TP+IGS ++
Sbjct: 57 EASQPAPAWAGAAPQAADNASATPQIGSMLK 87


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 330,434
Number of extensions: 10917
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 56
Effective length of database: 1,264,745
Effective search space: 70825720
Effective search space used: 70825720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)