BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0002.p
         (647 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313195|ref|YP_003777287.1| oxidoreductase [Herbaspirillum ...  1175   0.0  
gi|300313123|ref|YP_003777215.1| D-lactate dehydrogenase [Herbas...    57   6e-09

>gi|300313195|ref|YP_003777287.1| oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 1333

 Score = 1175 bits (3039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/608 (92%), Positives = 589/608 (96%)

Query: 8   CIGGNVAMNAGGKKAVLWGTALDNLASWRMVDPQGDWLEVTRLDHNLGKIHDVELATFRL 67
           CIGGNVAMNAGGKKAVLWGTALDNLASWRMVDPQGDWLEVTRLDHNLGKIHDVE+A F+L
Sbjct: 303 CIGGNVAMNAGGKKAVLWGTALDNLASWRMVDPQGDWLEVTRLDHNLGKIHDVEVARFKL 362

Query: 68  EWSHPGEKGQKTEVFKTEILEIAGRKFRKEGLGKDVTDKFLSGLPGIQKEGCDGLITSAR 127
           EWSHPGEKGQKTEVFKTEILEI+G+KFRKEGLGKDVTDKFLSGLPG+QKEGCDGLITSAR
Sbjct: 363 EWSHPGEKGQKTEVFKTEILEISGKKFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITSAR 422

Query: 128 WILHKMPKQTRTVCLEFFGQARDAIPSIVEIKNYLDAETKKGGAILAGLEHLDERYLRAV 187
           WILHKMPKQTRTVCLEFFGQARDAIPSIVEIK+YLDAETKKGGAILAGLEHLDERYLRAV
Sbjct: 423 WILHKMPKQTRTVCLEFFGQARDAIPSIVEIKDYLDAETKKGGAILAGLEHLDERYLRAV 482

Query: 188 GYATKSKRGVLPKMVLIGDIVGDDEIAVAQAASEVIRMANNRVGEGFVAISPEARKKFWL 247
           GYATKSKRGVLPKMVLIGDIVGDDE AVA AASEVIRMANNRVGEGFVA+SPEARKKFWL
Sbjct: 483 GYATKSKRGVLPKMVLIGDIVGDDENAVAAAASEVIRMANNRVGEGFVAVSPEARKKFWL 542

Query: 248 DRSRTAAIAKHTNAFKINEDVVIPLPRMGEYTDGIERINIELSIKNKLQFLDELNAFFVK 307
           DRSRTAAIAKHTNAFKINEDVVIPL RMGEYTDGIERINIELSIKNKLQ L EL++FFVK
Sbjct: 543 DRSRTAAIAKHTNAFKINEDVVIPLNRMGEYTDGIERINIELSIKNKLQLLAELDSFFVK 602

Query: 308 GNLPLGKSDDAEGEDIPAAEMLEDRVHQAEDLIAKTQARWSYLLANLDQPLTVAKGEMAA 367
           GNLPLGKSDDAEG+DIPAAEMLEDRVHQAE L+ +T ARWSYLLANLD+PL  AKGE+AA
Sbjct: 603 GNLPLGKSDDAEGDDIPAAEMLEDRVHQAESLLEQTHARWSYLLANLDKPLGEAKGELAA 662

Query: 368 LGLDKLLPVFDQRLLDQPDANVFHVVQDRTVRVSWKQEVRAQLRQIFSGGAFKLILEECN 427
           LGL+K+LPVF+QRL+DQP+A VFHVVQDRTVR+SWKQEVRAQLRQIFSG AFKLILEEC 
Sbjct: 663 LGLEKMLPVFEQRLVDQPEAAVFHVVQDRTVRISWKQEVRAQLRQIFSGAAFKLILEECQ 722

Query: 428 AIHKRVLRGRVFVALHMHAGDGNVHTNLPVNSDHYQMLQDAHEAVARIMTLARSLDGVIS 487
           AIHKRVLRGRVFVALHMHAGDGNVHTN+PVNSDHY+MLQDAH AVARIM LARSL+GVIS
Sbjct: 723 AIHKRVLRGRVFVALHMHAGDGNVHTNIPVNSDHYEMLQDAHVAVARIMKLARSLNGVIS 782

Query: 488 GEHGIGITKLEFLTEDEISEFREYKLRIDPEGRFNKGKLLNLPGFEADLSNAYTPSFGLM 547
           GEHGIGITKLEFLTEDEI EFREYK R+DPEGRFNKGKLLNLPG EADLSNAYTPSFGLM
Sbjct: 783 GEHGIGITKLEFLTEDEIGEFREYKKRVDPEGRFNKGKLLNLPGMEADLSNAYTPSFGLM 842

Query: 548 GHESLIMQQSDIGAIANSVKDCLRCGKCKPVCATHVPRANLLYSPRNKILATSLLVEAFL 607
           GHESLIMQQSDIGAIA+SVKDCLRCGKCKPVC+THVPRANLLYSPRNKILATSLLVEAFL
Sbjct: 843 GHESLIMQQSDIGAIASSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEAFL 902

Query: 608 YEEQTRRG 615
           YEEQTRRG
Sbjct: 903 YEEQTRRG 910


>gi|300313123|ref|YP_003777215.1| D-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 445 HAGDGNVHTNLPVNSDHYQMLQDAHEAVARIMTLARSLDGVISGEHGIGITKLEFLTEDE 504
           H GDGN H  + V+ +    +  A     R++  A  +DG  +GEHG+G+ K++FL ++ 
Sbjct: 381 HVGDGNFHVQMMVDPNDPADIARAEGVNQRMVARAIGMDGTCTGEHGVGLHKMDFLIQEH 440

Query: 505 ----ISEFREYKLRIDPEGRFNKGKLL 527
               I+  R  K  +DP+   N GK+L
Sbjct: 441 GEGAIAVMRAIKHALDPKNIMNPGKIL 467


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,027,970
Number of extensions: 85722
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 2
Length of query: 647
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 556
Effective length of database: 1,188,985
Effective search space: 661075660
Effective search space used: 661075660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)